CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAGATCCGCGG
GAATCCCGACCCCTGACCATAAATAGGGCAATTCATAAAAAATGTAGCTA
CATTCTGCATTCCTTAAGGGTATAGGGGGAGAAAACAGAAAATGCACTCT
TTTTATTTCTCCCTTCCCTCCCTGAAAATGGACTATTATTTGATCATGGC
CTGGATTAGGATGTGTGCGTACCTGCATAAAGGTACCCACTGAGAATTCA
CCTTTCTATAGTCCTAAAGAGACACATCCAGAAAATTGCTGCTCATTTGG
TTTGGCTGTCATGAGCCAGTTATTGACACAGCTGTACTCAACTGAAGACT
ATTCACTGTCTTGCTTGGGACTGTTAGAATGATACCACTAAGTCACCATT
ACTGCAAAATACCCTGTGTACAGTCAGTAATTTTGCTGTGGGGGCTCTAT
CCTTCTTTTAATCCTTCTTTTTATCCTTCGTTTTTTGCGGGGTAGGGGGC
TTGTTTTCAGGTTTGGTTTGTTGTTGTTGTTTAGNTGATTTGTGTTTTGG
TTGTTNGNTNNNNNNNNNNNNNNNNNNNNNNNTTTTNNTNTTTTTTTNTT
TTNNTNNTNTTTTTTTTTNTTTTTNNNNNTTTTTTNTTTTNNNTTTTTTT
TTTTTTTTTTNNNNNTTTNNNNNTNNNTNNNNNTNNNTNTTTTTNTTTTN
TTTTNTTTTNTTNNTTTTTTTTTTNNTTTTTTTTTTTNTTTTTTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTTAAAATTATTAGAGGAGTGTTAATACAGATGATCC
ACAAGATATTCATAATTGGAAAAGAATATAATCTAAATTATCATTCAATT
TCTTTTTAACCTTTATTACTTTTCTATATAAAGAACTTGATATTTGGGAG
ATTTTATGAGTGATATTTTAGGTTTTAAAAAAAGGTGAATAAGGCTTTAC
AGTTGTAAACTACTTTAGATTTTGAAGCAGTGAAATATCTTCCCCTTGCA
AGATGAAGTCATTCTTCATCTGTTTTCATGGGTTCCCATCCTAGAATATT
CTTAGAATACACCTGTGAGTTTACTGATGACATCTGTGCCTTCCCGAAAT
AAGGCAGAAATACAGTTCTTCCTACCCAATAAATCAGGTTAAGGCCTCTT
GCTACCATCATACATCCTTGTAAAACAATGGGGTGTGTGCTCAGATACAC
ACATTTTGTGATTTGTACAGCACAATAAACTACTCAGACAAGCTAGCTGA
TGCGAGCAGTCGACTGTTCTCAAAATCACTCCCCTGGCGTGGTGTCAGCG
TGTTCAATGGTTCCTCACTCATCCCCACGGTAAACAGTGCAGTGACTCAG
AAACCTGTATATATTGTGTCAGTGCTCACAAGCACTCAGAAACACTTTTC
CCCTGGTTGGAAAAAAATATTTTATCCCTTGGGAGCGCACATCTGCAGCT
CTTCCTTGTC

Query= MSMg01no420_i22.b1 MSMg01no420_i22.b1 CHROMAT_FILE:
MSMg01no420_i22.b1 PHD_FILE: MSMg01no420_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:26 2005
         (292 letters)



>mm_chr1_25373364_25374055
          Length = 692

 Score =  495 bits (256), Expect = e-144
 Identities = 283/292 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtgcgtacctgcataaaggtacccactgagaattcacctttctatagtcctaaagaga 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtgtgcatacctgcataaaggtacccactgagaattcacctttctatagtcctaaagaga 433

                                                                       
Query: 61  cacatccagaaaattgctgctcatttggtttggctgtcatgagccagttattgacacagc 120
           |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 432 cacatccagaaagttgctgctcatttggtttggctgtcatgagccagagattgacacagc 373

                                                                       
Query: 121 tgtactcaactgaagactattcactgtcttgcttgggactgttagaatgataccactaag 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cgtactcaactgaagactattcactgtcttgcttgggactgttagaatgataccactaag 313

                                                                       
Query: 181 tcaccattactgcaaaataccctgtgtacagtcagtaattttgctgtgggggctctatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcaccattactgcaaaataccctgtgtacagtcagtaattttgctgtgggggctctatcc 253

                                                               
Query: 241 ttcttttaatccttctttttatccttcgttttttgcggggtagggggcttgt 292
           |||||||||||||||||||||||||||  |||||| ||||||||||| ||||
Sbjct: 252 ttcttttaatccttctttttatccttcactttttggggggtagggggtttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no420_i22.g1 MSMg01no420_i22.g1 CHROMAT_FILE:
MSMg01no420_i22.g1 PHD_FILE: MSMg01no420_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:27 2005
         (541 letters)



>mm_chr1_25166978_25167918
          Length = 941

 Score = 1000 bits (517), Expect = 0.0
 Identities = 532/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttaaaattattagaggagtgttaatacagatgatccacaagatattcataattggaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tgttaaaattattagaggagtgttaatacagatgatccacaagatagtcataattggaaa 260

                                                                       
Query: 61  agaatataatctaaattatcattcaatttctttttaacctttattacttttctatataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatataatctaaattatcattcaatttctttttaacctttattacttttctatataaa 320

                                                                       
Query: 121 gaacttgatatttgggagattttatgagtgatattttaggttttaaaaaaaggtgaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacttgatatttgggagattttatgagtgatattttaggttttaaaaaaaggtgaataa 380

                                                                       
Query: 181 ggctttacagttgtaaactactttagattttgaagcagtgaaatatcttccccttgcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctttacagttgtaaactactttagattttgaagcagtgaaatatcttccccttgcaag 440

                                                                       
Query: 241 atgaagtcattcttcatctgttttcatgggttcccatcctagaatattcttagaatacac 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaagtcacacttcatctgttttcatgggttcccatcctagaatattcttagaatacac 500

                                                                       
Query: 301 ctgtgagtttactgatgacatctgtgccttcccgaaataaggcagaaatacagttcttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgagtttactgatgacatctgtgccttcccgaaataaggcagaaatacagttcttcc 560

                                                                       
Query: 361 tacccaataaatcaggttaaggcctcttgctaccatcatacatccttgtaaaacaatggg 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tacccaataaatcaggttaaggcctcttgctaccgtcatacatccttgtaaaacaatggg 620

                                                                       
Query: 421 gtgtgtgctcagatacacacattttgtgatttgtacagcacaataaactactcagacaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtgtgctcagatacacacattttgtgatttgtacagcacaataaactactcagacaag 680

                                                                    
Query: 481 ctagctgatgcgagcagtcgactgttctcaaaatcactcccctggcgtggtgtcagc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 ctagctgatgcgagcagtcgactgttctcaaaatcactcccctggcgtggtatcagc 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)