BAC Information

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BAC

Clone NameMSMg01-420J19
Chromosome1 (Build37)
Map Location 82,675,961 - 82,676,247
singlet/doubletsinglet
Overlap geneCol4a3
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
Downstream gene5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420J19.T7 (MSMg01no420_j19.b1)MSMg01-420J19.TJ (MSMg01no420_j19.g1)
ACCAG515437AG515438
length719766
length of high quality
(start - end)
287 (277 - 563)569 (65 - 633)
definitionCHROMAT_FILE: MSMg01no420_j19.b1 PHD_FILE: MSMg01no420_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:31 2005CHROMAT_FILE: MSMg01no420_j19.g1 PHD_FILE: MSMg01no420_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTATAATTGGGCGCCGAAGACTCCCATATCTCAGACCGCGGGAACTA
TTTTTTCCCCAAAGAAGAAACTCTCTCCATATATAAGTGAGACCCTCCTA
TATACTCACATATAGCTGTGTGGAGCATACCCATAAGACCCGGTTATATT
TTCCCAAGAAAACGTGTCGTGCAAGATAAGACTCAACACGTGGTGCTGCA
CAGGTGCCTCTTTACACCGCAAAATACAGACCCAGAGAACTCATCACCGG
CCTACCTAGTTCCGGAAGGGAAATACTTCCTCCTACCTGGTTGCCCTTTC
AATCTCTTTCTAGCCGGGAAGTCCTTGGGTGCCCCTGGGTCCTGGTATGC
ACCTTCCTGGGGATCCTTTTGCTCCAGGTGGTCCTGGCTGTCCTGGGTCT
CCTGCAGTAGAGAATCCAGGAGTTTGCTTGGTTGCCAAAGCCCAAGCAAA
GCCCAAGATAGAGCTGCTATCTGTTCATTTTCTATAACGTTACCTTCTCA
AAGCAGCCTACAGTCAATACCATGGGCATGCCTGTATAGAGGACACCCAT
GANAAGGAAAGACAGAAGACAGAAGGAACATAGAACAGTCTTACTGAGTA
AAAAAAGAATTAGGCATTTTTACTGATTTATTCACTGAGACACAAAGGCT
TAGAGCCCCCCTAGAGCACCCCCAGGGGAGTTCCTTAAGGGAAAAGGAAT
CCCCCCTGGCCGTTGGACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCCGAGGAATACCGAATGGCTGAGAAGCACCTG
AAAAAATGTTCAGCATCCTTAGTCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTCAGATCAAAAATTCAG
GTGACAGCAGATGCTGGTGAGGATGTGGTGAAACAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCA
GTTCCTCAGAATATTGTTACATAGTACTACCAGAGGATCCCACAATACCT
CTCCTGGGCATATATCCAGAAGATGTCCCAACCAGTAAGAAGGACACATA
TTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGACGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATT
TACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGANATT
CCTAGACATATGGATGGACCTAGAGGGCATCATCCTGAGTGAGGTAACCC
AATCAAAAATGAATTCACATGATATGTACTCACTGATAAGTGGATATTAG
CCCAGATACTTATAATACCCAAGTTATAAGATACAAATTGAAAAAACACC
TGAAACTCTTAAAGAATGAAGACCAAAGTGCGCACACTTTACCCCCTTCT
TAAAATTGGGAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_j19.b1 MSMg01no420_j19.b1 CHROMAT_FILE:
MSMg01no420_j19.b1 PHD_FILE: MSMg01no420_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:31 2005
         (287 letters)



>mm_chr1_82675761_82676447
          Length = 687

 Score =  497 bits (257), Expect = e-145
 Identities = 280/288 (97%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctcctacctggttgccctttcaatctctttctagccgggaagtccttgggtgcccct 60
           |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 487 ttcctcctacctggttgccctttcaatc-cattcaagccgggaagtccttgggtgcccct 429

                                                                       
Query: 61  gggtcctggtatgcaccttcctggggatccttttgctccaggtggtcctggctgtcctgg 120
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 428 gggtcctggtatgcaccttcctggggatccttttgctccaggtgatccaggctgtcctgg 369

                                                                       
Query: 121 gtctcctgcagtagagaatccaggagtttgcttggttgccaaagcccaagcaaagcccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtctcctgcagtagagaatccaggagtttgcttggttgccaaagcccaagcaaagcccaa 309

                                                                       
Query: 181 gatagagctgctatctgttcattttctataacgttaccttctcaaagcagcct-acagtc 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 308 gatagagctgctatctgttcattttctataacgtcaccttctcaaagcagccttacagtc 249

                                                           
Query: 240 aataccatgggcatgcctgtatagaggacacccatganaaggaaagac 287
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 248 aataccatgggcatgcctgtatagaggacacccatgaaaaggaaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)