BAC Information

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BAC

Clone NameMSMg01-420L03
Chromosome1 (Build37)
Map Location 44,854,330 - 44,854,703
singlet/doubletsinglet
Overlap geneLOC100041738
Upstream geneUxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
Downstream geneLOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420L03.T7 (MSMg01no420_l03.b1)MSMg01-420L03.TJ (MSMg01no420_l03.g1)
ACCAG515500AG515501
length716749
length of high quality
(start - end)
---373 (168 - 540)
definitionCHROMAT_FILE: MSMg01no420_l03.b1 PHD_FILE: MSMg01no420_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:37 2005CHROMAT_FILE: MSMg01no420_l03.g1 PHD_FILE: MSMg01no420_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTAGATTCACACAAACGAGTTTCCATCAACTCCAAAG
CTAACGATGTCCTCAGACGTCATCCGACGGCTTCATGGACTGCTTCCCAC
TGTCTTGCTATAACTGCCTTTCTGATGTTCCCATCATGGCATTTATAAAT
TGCCTTGATTTATGACTTTCTTTGTCCTGTTACTATACTTACCTCATGGA
ACTGCTTCCTTTCTCGAACATGGAAATTGGAACTACCTAAATTTGCGTTT
ATACGATACGTGCATACACATTTGTCTTTTAAGAAGACTGACGCTCACTC
ACTCTACGGTGATCATCATGACTTTGCGCATAGTAGCCAGGAGACTGGAG
ATCGAAGTTAAATGGTCTCCTCACAGAAAGGCATTCTTTACACGGAAAGG
GGGGGTAAATTTTCTCCCCCCGGGTTTTTCTCTAACGAAAAAAAAAGGCC
ACTCTTCCTTTTTTTCCCCCCCCTTTCTGACCCCTTATAACATTTTCCCC
CCCTTTTTCCCCTTCTTCTTTTCTTTAAAAACCCCCCTGGGGTTTTTTTC
CCCCCCCCCTTTGTTGGGTGTTTTCTCTCTCTTTTCTCGTATACACTCTT
TCTTCTTCTTTCTCCCCCAAACCAAAACTAATCCCTTTTTTTTTTTCTCT
TCGCTGGCCCCCTCCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTCTTTCAACACTAGACTGGAAGCCTTGCT
ATACAGGCGAAAGGACCTACATAGGAGGAGAGAGGAGAGAGGATAGAGTA
TATCGGATATCGCATAAACCAGCAACTTCTGTGAGAGTACAGACAATAAA
CTAGGCTTAAATATGGTTACCTTGAACTGGCTACTGATGTCAGAATACCC
CATAAGAGGTTTATCTGGACAGGACACTAAAATTTTTTGTTATTTATTTT
TAGTTCTTGCAGTAGATTTTTTTTTTTTTTCTAATAAGAAAATGTAGGCC
TAAAAATGGCTCTTGAGTAAAGATGTCTTCCACTTCGCTTGATGACCTCA
GTTATATATCTCAATAGGAAGTGGAGTCACTTCTTCTAAGCTGTACTCTT
CACATGTATGCTATACCCATGTGCCTGCCCCTGTGCACACAGGCAGATAC
CCATAAAAATATTTTAAAAAATCTTTATATCATATAATGTAAATTCACAC
TGAAGTGGATGTTCTGACCACTTTATGATGTTGCATTTCTAAATACTGCT
ACATATTATCTTTTTTGTTACTCCCCTATCTGACACTAATATTGGCTATT
AATAATTTTTTCTTGCCCCCATTTATATCCATACGTTCCCCCTCTTCTTT
TTCTTCAGTATTTTCGGCTGCTTACCTCTCGTTTATATTTCCTGGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_l03.g1 MSMg01no420_l03.g1 CHROMAT_FILE:
MSMg01no420_l03.g1 PHD_FILE: MSMg01no420_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:37 2005
         (373 letters)



>mm_chr1_44854130_44854903
          Length = 774

 Score =  669 bits (346), Expect = 0.0
 Identities = 367/378 (97%), Gaps = 9/378 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagcaacttctgtgagagtacagacaataaactaggcttaaatatggttaccttgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagcaacttctgtgagagtacagacaataaactaggcttaaatatggttaccttgaac 260

                                                                       
Query: 61  tggctactgatgtcagaataccccataagaggtttatctggacaggacactaaaattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctactgatgtcagaataccccataagaggtttatctggacaggacactaaaattttt 320

                                                                       
Query: 121 tgttatttatttttagttcttgcagtagatt----ttttttttttttctaataagaaaat 176
           ||||||||| |||||||||||||||||||||    ||||||||    |||||||||||||
Sbjct: 321 tgttatttagttttagttcttgcagtagattagaatttttttt----ctaataagaaaat 376

                                                                       
Query: 177 gtaggcctaaaaatggctcttgagtaaagatgtcttccacttcgcttgatgacctcagtt 236
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 377 gtaggcctaaaaatggctcttgagtaaagatgccttccacttcgcttgatgacctcagtt 436

                                                                       
Query: 237 atatatctcaataggaagtgga-gtcacttcttctaagctgtactcttcacatgtatgct 295
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 437 atatatctcaataggaagtggaagtcacttcttctaagctgtactcttcacatgtatgct 496

                                                                       
Query: 296 atacccatgtgcctgcccctgtgcacacaggcagatacccataaaaatattttaaaaaat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atacccatgtgcctgcccctgtgcacacaggcagatacccataaaaatattttaaaaaat 556

                             
Query: 356 ctttatatcatataatgt 373
           ||||||||||||||||||
Sbjct: 557 ctttatatcatataatgt 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 774
Length adjustment: 9
Effective length of query: 364
Effective length of database: 765
Effective search space:   278460
Effective search space used:   278460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)