BAC Information

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BAC

Clone NameMSMg01-420L23
Chromosome1 (Build37)
Map Location 163,951,258 - 163,951,773
singlet/doubletsinglet
Overlap geneDnm3
Upstream geneZbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc
Downstream geneLOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420L23.T7 (MSMg01no420_l23.b1)MSMg01-420L23.TJ (MSMg01no420_l23.g1)
ACCAG515540AG515541
length1,004748
length of high quality
(start - end)		---511 (69 - 579)
definitionCHROMAT_FILE: MSMg01no420_l23.b1 PHD_FILE: MSMg01no420_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:41 2005CHROMAT_FILE: MSMg01no420_l23.g1 PHD_FILE: MSMg01no420_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATAAAACGTCAACCCGATTATGTAATGTCGACCCGCCTACTAATTTTA
TTACGACACGGGGCCAACGCAAACGCCGAGACATAAATAATAATACGAAG
CGCGTAAATAAAAATACGCCCCGTGAACACATGTAATACATACGCGCCCG
GAAACTAGAACGCGGAATCGGGCGAACGGAGGTACAGGCGGTACCGCCTA
GGACGGCGACCCCGGGCGCGAAAAATAAGTGTGATATTACCCGCCTAACC
TCTAGCCCCCGATACGAATCGTTTGCGGCCGAACGGGCGAGACATCGCGA
AAATGAAAAATATTGGGAGGGCTAAGGCCCGTGAGGCAAGGGCGCAGCGG
GGTGTCGACATATTGGGGGGGCACTACCGAGCCCCACTCCGGTTTGGTTA
AACGGCGAATCTACTCGGCCCCGTTAAACTTGGGCACCCGGCGCGCCTAA
TTTTCTCATTCCCGCCCGCCCCCCCGTTTTCTTATCCGGGACTTCCCCCG
CGGTACAGGCCCGGGTAGGGTGCGGCGAAAAAATAAGAGTCCCTATATAC
TGAGCCGTATATTGCGAGCATTCCGGTTTTCGCGCCAGGACAACCGCCTT
TTGCGTCGCCAGCGGTCGCTTATATATTATAACGATACGGTGGCCCGTGA
CTAAATTAACACCGTACTCCACGTATATACATCTCGCCGTGTGGCGTTTC
CCGCGAGCGCCGCCTTTCTGCTGATCGGCGGGTTTAATCGCATCATAAAT
CAACACACCACGGCGTGTTTTTATGCCGCTTATTATACTTGGGTGGTATC
GAAAAATACCGCCGGCGCTGAAACCACTTATACGTAAACACCACACATCC
TCAACAACAAATTTGGACGCGACANAACGGCCACCTACTATTATCGCCGC
ATTCCCACTAGTATAATGCGAACGAGAGACAGGCGCACAAACACACGCGT
AATCGGAAGCGCGGTTTATATTTGCAATAGCCTGTCCGGTCGGGCTAATA
CGTA

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAGGAAGTGGGGGGGGTAGCTTCAGGGCAGC
AGGAGCTTGTCTGAAAGAGTGAAGCAGATTTGAAATTTGAAGGGGGTCTA
CATGAGAAAGAGTGGGAGGGAGAGAGGGCTTCTGGAAAGGGGCTTATGCA
GATAACAGACAGGTGTGTGTAGTAGTGGTAGAATAGCAATAATAGTAGTA
GCAGCAGTGATAGTTTTGCGTTTAAAATAAAGTTTTAACTAGAAATGTTT
TAGATTCTTTTCATCTAAAATATGTGTGTGTCACAAGCCTGTTTTAAAAA
AAGGAAGAACAAAAAAGAACAGAACTGTTACACCAGATGCAATTCTTTTA
GTGACCCAAGACCACTAAAAAGGAAAAAGAGCAGAGCAGGAGAACCACTA
AGATTCGGAGTGTCCCAGCTTTCTGCCTAGCTATTGTGTCCAGCTGCCCC
AGAGATCCCCTTATTCTGACAGCCCACAGCAAAGCACAGGGCCACATCCT
AAGGGCAGAAAAGGACCACGGATTTTTAGAGCGAGTATATGTTTTCAAAG
AGACCCTTCTGATACAGAAATGCTTATACATTTTTATTGATGATTTTGAG
CCTAAAAAAAAATGTGGCTTTCATACGTGTATATCAATTCCAAGAAAAGA
CCCCTCCTTTTTTGACCCCGCCCGGTAAACCAGTGTTTTGCCCTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_l23.g1 MSMg01no420_l23.g1 CHROMAT_FILE:
MSMg01no420_l23.g1 PHD_FILE: MSMg01no420_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:41 2005
         (511 letters)



>mm_chr1_163951058_163951973
          Length = 916

 Score =  874 bits (452), Expect = 0.0
 Identities = 500/520 (96%), Gaps = 13/520 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaagtgg-gggggg-tagcttcagggcagcaggagcttgtctgaaagagtgaagca 58
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agaggaagtggtggggggatagcttcagggcagcaggagcttgtctgaaagagtgaagca 657

                                                                       
Query: 59  gatttgaaatttgaagggggtctacatgagaaagagtgggagggagagagggcttctgga 118
           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 656 gatttgaaattcgaagggggtctacatgagaaagagtgggagggagagggggcttctgga 597

                                                                       
Query: 119 aaggggcttatgcagataacagacaggtgtgtgtagtagtggtagaatagcaataatagt 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 596 aaggggcttatgcagataacagacaggtgtgtgtagtagtggtagaatagcagtaatagt 537

                                                                       
Query: 179 agt------agcagcagt-gatagttttgcgtttaaaataaagttttaactagaaatgtt 231
           |||      ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agtagcagcagcagcagtag-tagttttgcgtttaaaataaagttttaactagaaatgtt 478

                                                                       
Query: 232 ttagattcttttcatctaaaatatgtgtgtgtcacaagcctgttttaaaaaaaggaagaa 291
           ||||||||||||||||||||||||||||||||||||||||||  |||||||||  |||||
Sbjct: 477 ttagattcttttcatctaaaatatgtgtgtgtcacaagcctg--ttaaaaaaa-aaagaa 421

                                                                       
Query: 292 caaaaaagaacagaactgttacaccagatgcaattcttttagtgacccaagaccactaaa 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 caaaaaagaacagaactgttacaccagatgcaattcttttagtgacccaagaccactaaa 361

                                                                       
Query: 352 aaggaaaaagagcagagcaggagaaccactaagattcggagtgtcccagctttctgccta 411
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 360 aaggaaaaagagcagagcaggagaacccctaagattcggagtatcccagctttctgccta 301

                                                                       
Query: 412 gctattgtgtccagctgccccagagatccccttattctgacagcccacagcaaagcacag 471
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gctattgtatccagctgccccagagatccccttattctgacagcccacagcaaagcacag 241

                                                   
Query: 472 ggccacatcctaagggcagaaaaggaccacggatttttag 511
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggccacatcctaagggcagaaaaggaccacggatttttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 916
Length adjustment: 10
Effective length of query: 501
Effective length of database: 906
Effective search space:   453906
Effective search space used:   453906
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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