BAC Information

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BAC

Clone NameMSMg01-420M22
Chromosome1 (Build37)
Map Location 174,776,271 - 174,776,758
singlet/doubletsinglet
Overlap genenone
Upstream geneCd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875
Downstream geneApcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420M22.T7 (MSMg01no420_m22.b1)MSMg01-420M22.TJ (MSMg01no420_m22.g1)
ACCAG515584AG515585
length754764
length of high quality
(start - end)		154 (163 - 316)488 (62 - 549)
definitionCHROMAT_FILE: MSMg01no420_m22.b1 PHD_FILE: MSMg01no420_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:46 2005CHROMAT_FILE: MSMg01no420_m22.g1 PHD_FILE: MSMg01no420_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTCTATAATTGCGGCGGTAATAGAATCCTAATTTTCAAACATCCGCGG
AAATCACTCTATTCCGACCTTTTTCTTCTTTGTGAACATCTTGGATACTA
TCTGCGCAATAAAAATCCTCTCCCATTCCACCTGGATTGGTTTGCTGGTT
GACATAATGGTCAACGCTTTCTCTTGGCTCTATGTCTTTTGATAATTGCT
GTTTCAGTATCTAGAAAAATCAAGTTATAAACCAGGGGGATACCAACCAA
AGAATACACATGGAGGGACTCATGTAGCAGAGATTGGCCATGGGAGAGAA
GCCCTTGGTTCTGAGTATATTCTCAATACCCCAGTTTAGGGGAATCACAA
GACAGGGAAGAGGGAGTGGGTGGGTTGGTGAAGCAGGGGGAGGGGCNATG
GGATAGGGGGNNNNNGNNNNNNTTTNNNNNNNNNGNNNNNNNNNNNNNNN
GNNNNNNNNNGNNNTGNNNNNNNGNGNNTNNGNGNNGTTNNNNGTTTTTT
GTTTTTTTTTTTTTTTTTTTTNTTTTTGTGTTTTTTTTTTNTTTTTTTTT
GGTTTTTGTTTTGTTTTTTTTTTTNNNTTTTTTTGTTTTTTTTTTGTGGG
GTGGTTTTTTTNGTNTTTTNGNNNNTTTTTGNTTTTNNTTTTTTTTTTTT
TTTTTNNNNNNNNGTGNGGGGGNNGGTTTGGTTTTTGTTTTTGNTNTTTT
TTTTTTNGTGTTTTTTTTTGTGTTTTGGTTTTTTTTTTTTNNGTTTTTTT
TTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTCAGGGATACTGATGGAAGTCTCCACCCAAACACCAAT
GAACCTTGATATGATGTCCAAGGTTAGGACCATCAGGAGATACATGTCAG
GAAAGAAGAGCAAGAGAGAGAAAAACCTTCCTCGTCTGTTTTTATTTCTC
TTGATTTCATTTGGACCCCTAGCCTAGACAACCTCAGATATCCTCAGAAA
TATTTGCCAGTTCCCTAGTCATTCCTTGAGTCATCCAAGTTGACACACCA
AATTAATGTCACTCAATGTTCTTGGGTTTTAGAGCTCCATATAGGAATTT
GGAGAGCATGCAACATGAAGTCTATACTAGACTGGCAATAAAACCATGCC
CAGGGGATTCCTATCACAATGAAAAATCTGAACAAGGGTTTAGCAGTGTT
AGTCAATATACTTGAAAGAGAAAGGGCGAGAAGAGAACGAAAAGAAAGAA
GAGCGAGGGGAAGAAGGACGAGAGAATGGAAGTTTAAGTTGGTTTTTAGA
AGACCCAAGAATGAGCTGAAAATTTATTGAATTTGTAAAAAAAATTAAAA
ATGTAGCAGTATATGCAATTAAGGCAAAGAAGGCAATATCCTTTGTATAC
ATAAACAACAGCCAGCTATAGGGCTGGAAGGCTGGAGGGCTGTAGGGCTG
GGGCCCCCCTATTTCCTACAAACAGGAAANATCTCNCTTTCTTCTCTTTC
CTTCTTTTGAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_m22.g1 MSMg01no420_m22.g1 CHROMAT_FILE:
MSMg01no420_m22.g1 PHD_FILE: MSMg01no420_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:46 2005
         (488 letters)



>mm_chr1_174776071_174776958
          Length = 888

 Score =  944 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagggatactgatggaagtctccacccaaacaccaatgaaccttgatatgatgtccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagggatactgatggaagtctccacccaaacaccaatgaaccttgatatgatgtccaa 260

                                                                       
Query: 61  ggttaggaccatcaggagatacatgtcaggaaagaagagcaagagagagaaaaaccttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttaggaccatcaggagatacatgtcaggaaagaagagcaagagagagaaaaaccttcc 320

                                                                       
Query: 121 tcgtctgtttttatttctcttgatttcatttggacccctagcctagacaacctcagatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgtctgtttttatttctcttgatttcatttggacccctagcctagacaacctcagatat 380

                                                                       
Query: 181 cctcagaaatatttgccagttccctagtcattccttgagtcatccaagttgacacaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcagaaatatttgccagttccctagtcattccttgagtcatccaagttgacacaccaa 440

                                                                       
Query: 241 attaatgtcactcaatgttcttgggttttagagctccatataggaatttggagagcatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaatgtcactcaatgttcttgggttttagagctccatataggaatttggagagcatgc 500

                                                                       
Query: 301 aacatgaagtctatactagactggcaataaaaccatgcccaggggattcctatcacaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatgaagtctatactagactggcaataaaaccatgcccaggggattcctatcacaatg 560

                                                                       
Query: 361 aaaaatctgaacaagggtttagcagtgttagtcaatatacttgaaagagaaagggcgaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaatctgaacaagggtttagcagtgttagtcaatatacttgaaagagaaagggcgaga 620

                                                                       
Query: 421 agagaacgaaaagaaagaagagcgaggggaagaaggacgagagaatggaagtttaagttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagaacgaaaagaaagaagagcgaggggaagaaggacgagagaatggaagtttaagttg 680

                   
Query: 481 gtttttag 488
           ||||||||
Sbjct: 681 gtttttag 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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