Query= MSMg01no421_j09.b1 MSMg01no421_j09.b1 CHROMAT_FILE:
MSMg01no421_j09.b1 PHD_FILE: MSMg01no421_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:49 2005
(532 letters)
>mm_chr1_97988604_97989535
Length = 932
Score = 998 bits (516), Expect = 0.0
Identities = 522/524 (99%)
Strand = Plus / Plus
Query: 6 aattttgtatgttatttgtatgttatactattgctatcatcaacagtgcaaagtgctctt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattttgtatgttatttgtatgttatactattgctatcatcaacagtgcaaagtgctctt 265
Query: 66 gaacaaagccaagagagtccttgtgttatgcattgtgacccatgtctcttctattacaat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaacaaagccaagagagtccttgtgttatgcattgtgacccatgtctcttctattacaat 325
Query: 126 aaaatctttgatacagcatacaattatccatgggaatacctaaaacatgtggttcatcta 185
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 326 aaaatctttgatacagcatacaattatccatgggaatacctaaaatatgtggttcatcta 385
Query: 186 actatttacagattcaaattggttagatgaattttgtgtgttataatgccaagacatttc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actatttacagattcaaattggttagatgaattttgtgtgttataatgccaagacatttc 445
Query: 246 ttttatccaaattactgcttattcttgtttgttgcacgaattttgacattcagtaattta 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttttatccaaattactgcttattcttgtttgttgcacgaattttgacattcagtaattta 505
Query: 306 gggaaactaagaaattacatgaaaatattgccctttgaccaactctttatcatatagatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gggaaactaagaaattacatgaaaatattgccctttgaccaactctttatcatatagatt 565
Query: 366 ctcattgtcatttactgtagccaaagtgtaaaaactgcttatcaatcagaaagagaataa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctcattgtcatttactgtagccaaagtgtaaaaactgcttatcaatcagaaagagaataa 625
Query: 426 aattaagagttttaagtatttttctatgagtgactaatttagcaaaaatcatggggagag 485
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aattaagagttttaaatatttttctatgagtgactaatttagcaaaaatcatggggagag 685
Query: 486 ccagtggaaaggaaatatgtgtgtgtgtgtgtgtgtgtgtgtgt 529
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccagtggaaaggaaatatgtgtgtgtgtgtgtgtgtgtgtgtgt 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_j09.g1 MSMg01no421_j09.g1 CHROMAT_FILE:
MSMg01no421_j09.g1 PHD_FILE: MSMg01no421_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:49 2005
(473 letters)
>mm_chr1_98025330_98026202
Length = 873
Score = 826 bits (427), Expect = 0.0
Identities = 456/473 (96%), Gaps = 14/473 (2%)
Strand = Plus / Minus
Query: 1 tttccaagccttgttttcctgttttagaaggggagaatgtgtgagacaacagagggatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tttccaagccttgttttcctgttttagaaggggagaatgtgtgagacaacagagggatac 811
Query: 61 caagttctcttctctgccagttttgattctgaagtcaaatgatttcccagaaaccttcct 120
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 810 caagttctcttctctgccagttttgattctgaa--c---tgatttcccagaaaccttcct 756
Query: 121 ttagactgaatttcttagcactgtgtcacatgtttacccataaattcagaagagtttgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttagactgaatttcttagcactgtgtcacatgtttacccataaattcagaagagtttgga 696
Query: 181 caattatgtttgccagctagcaatggctaccattttataactaatactgcaattcatcac 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 695 caattatgtttgccagctagca---------attttataactaatactgcaattcatcac 645
Query: 241 agaaggaatgcagcaaaaccagttctgaatggtactctatggtttgacctgttttccatg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agaaggtatgcagcaaaaccagttctgaatggtactctatggtttgacctgttttccatg 585
Query: 301 attatattattttggcattagtacatttgattttaggcactagaaatttctctgtgactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 attatattattttggcattagtacatttgattttaggcactagaaatttctctgtgactc 525
Query: 361 ataattcataacttactcaatgtacagtagactaatcttcaggcttacattgatgaagcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ataattcataacttactcaatgtacagtagactaatcttcaggcttacattgatgaagcg 465
Query: 421 agaaggagaggaaatgttgcagaggaaatcctgaaacaagcatgctactgagc 473
|||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agaaggggagggaatgttgcagaggaaatcctgaaacaagcatgctactgagc 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
