Query= MSMg01no421_m01.b1 MSMg01no421_m01.b1 CHROMAT_FILE:
MSMg01no421_m01.b1 PHD_FILE: MSMg01no421_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:02 2005
(455 letters)
>mm_chr1_87501673_87502527
Length = 855
Score = 743 bits (384), Expect = 0.0
Identities = 420/432 (97%), Gaps = 2/432 (0%)
Strand = Plus / Plus
Query: 2 ggaattcatagcgtgt-tcccgtcttaccttcgctagcctgagtagagatttaataatgt 60
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcatagcgtgtgtct-gtcttaccttcgctagcctgagtagagatttaataatgt 260
Query: 61 attgacctttccaaaggatgtgagcataatgcccacttcttttaattctatggatttcta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgatctttccaaaggatgtgagcataatgcccacttcttttaattctatggatttcta 320
Query: 121 ctttaatttcattgaatctttgtcttcattgggatgaaatcattcctcataagattgttc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctttaatttcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttc 380
Query: 181 atttatgcctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttatgcctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgc 440
Query: 241 ctttgctgtgtctcagatttaataatttttagacttctttttttttttagtgtaggagaa 300
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 441 ctttgctgtgtctcagatttaataatttttagacttcagtgcttttttagtgtaggagaa 500
Query: 301 agggtcacacttttgcttgtcttaccccatttaaaaaaaatttcattcatttatttattg 360
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 agggtcacccttttgcttgtcttaccccatttaaaaaaaattacattcatttatttattg 560
Query: 361 tatgtgtgcaggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgtgtgcaggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggt 620
Query: 421 tctctcctacta 432
||||||||||||
Sbjct: 621 tctctcctacta 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_m01.g1 MSMg01no421_m01.g1 CHROMAT_FILE:
MSMg01no421_m01.g1 PHD_FILE: MSMg01no421_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:02 2005
(509 letters)
>mm_chr1_87482741_87483649
Length = 909
Score = 903 bits (467), Expect = 0.0
Identities = 499/511 (97%), Gaps = 4/511 (0%)
Strand = Plus / Plus
Query: 1 aactatgtttttgtctgttaattgtgcacttgcacgtgtgtatatgtggatgttttaact 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 201 aactatgtttttgtctgttaattgtgcacttgcacgtgtgtatatgtgtatgatttaact 260
Query: 61 ccgagttatctctctgatctcaaccctaacctttttaaatgatcagctgggaaggaagaa 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ccgagttatctctctgatctcaaccctaacctttttaaatgaccagctgggaaggaagaa 320
Query: 121 gatatcagagttttgaactagaaggagcaagcttcaaggacaagtgttaaaatgagaatt 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatcagagttttgaactagaaggagcaagcttcaaggacaagtgttaaaatgagaatt 380
Query: 181 ctttgaatcagttcttgggaaattaagctagggaacagataatggtagatcctaaggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 ctttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaaggatg 440
Query: 241 acttctgggcatgataaaccaagaatttgtgaagggaaaacaagaaccagacatgaggag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggag 500
Query: 301 ataaagacaat--agcagctggagtattggatcatttgcctgctatcccagcacttgaaa 358
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ataaagac--ttgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaa 558
Query: 359 gcatccaggaccatggaaagaactgaggtgggagaaaacggacttggaaggcttccagga 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcatccaggaccatggaaagaaccgaggtgggagaaaacggacttggaaggcttccagga 618
Query: 419 agcaatggggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcattatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcaatggggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcattatt 678
Query: 479 atcattatcataattatgacatttatcagta 509
|||||||||||||||||||||||||||||||
Sbjct: 679 atcattatcataattatgacatttatcagta 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
