NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGGATATTTCAGAGTTGATACACCAGTCATCCGTGGTGTAG
GATCACTCTGCCCTTCAGCTTCACTTCAGAGATTTGAGGATTAGTACAGG
GTTTAAGGGTTAGTACAGGGTCAAAGATGGCTGCATGATACATACCATAC
AGAGAACAGAAAATAAGGAAAGAGGCATGCCTCCTTTGGCTGAGATGCAT
TCAGCTGATTACACCCCCATTGAACATACTTCCAGAAGTCTCAGATCTAT
AGTTTGTTGGTTGTAGACCTCTATGTTCTTCTGAAATTGGGAAAGGCAAG
AGTAATTTTGTATAGTCCTTTACTGTCTTTTTATGCATACTCTAACCATG
TAGGTCAAACAAGTAGGCTACCCCCGGTGATCCAGCTGCGAAAGCCTTCA
CTTACTTTGTAAGTCTAAGATACTCTCTTATCAGCTCTCTCTTCCCCTTT
TGATTTGCAAATAGTATCTTGGATATTCTAAGTTTCTGGGCAAATATCTG
CTTAATAGTGAGTGCATATCATGTGTGTTCTTTTGTGATTGGGTTACCTC
ACTCGGGATGATATCCTCCAAATAAATCATTTTGCTTAAGAATTTCATGA
ATTCATTGTTTTATATTGCTGAGTAGCACTTCATTGTGTAAATGTATCAC
ATTTTCTGTATCCATTCCTCTGTTGAGGGGCTCTGGGTTCTTTCCAGCTT

AAAANCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTTCCCCAGTACTGTAT
GTGCTGTTGGTATGTTTCCTGCCATGATGATAATGGACTAAACTTCTGAA
ACCTTAAGCCAGCCCCAATTAAATATTTTTCCATATAAGAGTTGACACAC
GGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCAC
AAGGGCCCACACGGGACTCCCCACGGGATCCTAAGACCTCTGATGAGTGG
AACACAGCGCCTGCCCCAATCCAATGGTGCGGAACCTGAGACTGCGGTAC
ATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCCCTTCCGC
TCCACTCGAGTCCCGGGCTACCTTGCCAGCAGAGTCTCACCCAACACCCG
CAAGGGCCAACACGGGACTCCCCACGGGATCCTAAGACTTCTGGTGAGTG
GAACACAGTGCCTGCCCCAATCCAGTCGCGCGGAACCTGAGACTGTGGTA
CATAGGGAAGCAGGCTACCCAGGCCTGATCTGGGGCACAAGTCCCTTCCG
CCCGACTCGAGACCCGGGCTACCTTGTCAGCAGAGTCTTGCCCTACACCC
GCCAAGTTCCCTTCTGGATTTCACACGAAATCCTAAAAACTCTGGGGAGT
GGAACCAAAACTTTTGCCGAGAATCTGGTTTTAAAACCAAAAA

Query= MSMg01no421_m17.b1 MSMg01no421_m17.b1 CHROMAT_FILE:
MSMg01no421_m17.b1 PHD_FILE: MSMg01no421_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:06 2005
         (568 letters)



>mm_chr1_19176739_19177707
          Length = 969

 Score =  938 bits (485), Expect = 0.0
 Identities = 545/565 (96%), Gaps = 1/565 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatacaccagtcatccgtggtgtaggatcactctgcccttcagcttcacttcagagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tgatacaccagtcatccgtggtgtaggatcactctgcccttcagcttcacttccgagatt 260

                                                                       
Query: 61  tgaggattagtacagggtttaagggttagtacagggtcaaagatggctgcatgatacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggattagtacagggtttaagggttagtacagggtcaaagatggctgcatgatacata 320

                                                                       
Query: 121 ccatacagagaacagaaaataaggaaagaggcatgcctcctttggctgagatgcattcag 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgcagagaacagaaaataaggaaagaggcatgcctcctttggctgagatgcattcag 380

                                                                       
Query: 181 ctgattacacccccattgaacatacttccagaagtctcagatctatagtttgttggttgt 240
           |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ctgagtacacccccattgaacatacttcccgaagtctcagatctatagtttgttggttgt 440

                                                                       
Query: 241 agacctctatgttcttctgaaattgggaaaggcaagagtaattttgtatagtcctttact 300
           |||||||||||  | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 agacctctatgaccatctgaaattgggaaaggcaagagtaattgtgtatagtcctttact 500

                                                                       
Query: 301 gtctttttatgcatactctaaccatgtaggtcaaacaagtaggctacccccggtgatcca 360
           |||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gtctttttatgcgtactctcaccatgtaggtcaaacaagtaggctacccctggtgatcca 560

                                                                       
Query: 361 gctgcgaaag-ccttcacttactttgtaagtctaagatactctcttatcagctctctctt 419
           |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gctgcgaatgtccttcacttactttgtaagtctaagatactctcttatcacctctctctt 620

                                                                       
Query: 420 ccccttttgatttgcaaatagtatcttggatattctaagtttctgggcaaatatctgctt 479
           | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 cgccttttgatttgcaaatagtatcttggatattctaagtttctgggctaatatctgctt 680

                                                                       
Query: 480 aatagtgagtgcatatcatgtgtgttcttttgtgattgggttacctcactcgggatgata 539
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 aatagtgagtgcatgtcatgtgtgttcttttgtgattgggctacctcactcgggatgata 740

                                    
Query: 540 tcctccaaataaatcattttgctta 564
           ||||||| ||| |||||||||||||
Sbjct: 741 tcctccagatacatcattttgctta 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space:   535122
Effective search space used:   535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)