BAC Information

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BAC

Clone NameMSMg01-422A08
Chromosome1 (Build37)
Map Location 167,904,646 - 167,905,214
singlet/doubletsinglet
Overlap genePou2f1
Upstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247
Downstream geneLOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422A08.T7 (MSMg01no422_a08.b1)MSMg01-422A08.TJ (MSMg01no422_a08.g1)
ACCAG516511AG516512
length734754
length of high quality
(start - end)
578 (66 - 643)375 (67 - 441)
definitionCHROMAT_FILE: MSMg01no422_a08.b1 PHD_FILE: MSMg01no422_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:23 2005CHROMAT_FILE: MSMg01no422_a08.g1 PHD_FILE: MSMg01no422_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATCCGCGGAATTCCTCTCC
ATATTTCTTATATTGTATTTGCCACACTTATTTTTGGGAGACTTCTTAGT
AACTGGTCATGAAGAATTCTCTGTTTTCTTCACAGCTAGTATTTATTATT
TAAAAAAGCAAACAGATAAATAAATAAAACTTTAAAGGATGTAATTTTCT
TTTAGCTTTCCTCCTCACAAATAGTATTCAGTATCTGTGTAAACACTCTT
AAAGGCCAGGTGTGTGATCATAAGTCCACATCAGGCACTTGCGTTATCTT
TTCTCTAAAGGAATATCTAGTCAATGTTCTGGATTCTTTAAATTGAGAAG
TGAAATGGGTATTATGTACATGCTTATAGAACAAGGGAAAACAAGTCTCA
GCACGTAGGTAATTAGCAAAGTGTTAAGTAAGACTTTGTGATCTAAGCCT
TGAGAAGAATTCTTTTGAAGAAGTAATATTTTTTAGGATCCCCTGTTAGT
GTCCTTACGATCAGATCCTTTGCAGACATTTTGTAAAACCTATTCTTAGT
AGTTCTGTGAATAGGCGAGGACCTGAGTTTGGATCTCTAGAGTTCACACA
GGGCTGTTTGGACTTGGTATATATACCAGTCCTTCTTCAGTGAAATGTGA
GTGGAGACTGGAATCCCAGGGAGTTCATAGACTAGACACCTGGTCCCAAA
CAAGATTGAACACAAGGACAATTCCCCAGGTTGG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGATTAGCTCTGTACCCCATTTTTGATAGGGC
TATTTGATTTTCTGGAGTCTAACTTCCTGAGTTCTTTGTATATATTGGAT
ATTAGCCTTCTATCGGATGTAGGATTGGTAAAGATCTTTTCCCAATCTGT
TGGCTGCCTTTTTGTCCTATTGACAGTGTCTTTTGCCTTACAGAAGCTGT
GCAATTTTATTAAGGTTCCATTTGTCTATTGCTGATCTTAGGGCATAAGC
CATTGGTGTTCTGTTCTTGAATTTTTCCCCTGTGCCCATGTGTTTGAGGC
TTTCCCCCACTTTCTCCTCTATACGTTTCAGTGTCTCTGGTTTTATGTGG
AGGTCCTTGATCCACTTTAACTTGAGCTTTGTACACGGAGATAAGAATGG
GTCTATTTGCATTTTTTCTACATGTTGACCACCAGTTGAACCAGCACCAT
TTGTCAAATATGCTGTCTTTTTCCAGTGGATGGTTTTTAGCTCCTTTGTC
AATTATCTATTGACCCTTTAGTGTGTGGTTTCCTTTCCTGGTCCTTCCAT
TTCTATTCTGTTTGATTTTTTTCCCCTATTCCCGGTACCTATTATCATTA
CCGCTTTTTTACCCCTATTGTGCTCCGGTAATTACTTTTTTGGAAGCTTC
AGTTAAATCGTGTTTTCTCCCTCTATAATCCTTCTCTTTACCCGTTGTAT
AAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_a08.b1 MSMg01no422_a08.b1 CHROMAT_FILE:
MSMg01no422_a08.b1 PHD_FILE: MSMg01no422_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:23 2005
         (578 letters)



>mm_chr1_167904646_167905623
          Length = 978

 Score = 1046 bits (541), Expect = 0.0
 Identities = 562/569 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttgccacacttatttttgggagacttcttagtaactggtcatgaagaattctctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tatttgccacacttatttttgggagacttcttagtaactggtcatgaagaattctctgtt 510

                                                                       
Query: 61  ttcttcacagctagtatttattatttaaaaaagcaaacagataaataaataaaactttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttcttcacagctagtatttattatttaaaaaagcaaacagataaataaataaaactttaa 450

                                                                       
Query: 121 aggatgtaattttcttttagctttcctcctcacaaatagtattcagtatctgtgtaaaca 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aggatgtaattttcttttaactttcctcctcacaaatagtattcagtatctgtgtaaaca 390

                                                                       
Query: 181 ctcttaaaggccaggtgtgtgatcataagtccacatcaggcacttgcgttatcttttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctcttaaaggccaggtgtgtgatcataagtccacatcaggcacttgcgttatcttttctc 330

                                                                       
Query: 241 taaaggaatatctagtcaatgttctggattctttaaattgagaagtgaaatgggtattat 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taaaggaatagctagtcaatgttctggattctttaaattgagaagtgaaatgggtattat 270

                                                                       
Query: 301 gtacatgcttatagaacaagggaaaacaagtctcagcacgtaggtaattagcaaagtgtt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtacatgcttatagaacgagggaaaacaagtctcagcacgtaggtaattagcaaagtgtt 210

                                                                       
Query: 361 aagtaagactttgtgatctaagccttgagaagaattcttttgaagaagtaatatttttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aagtaagactttgtgatctaagccttgagaagaattcttttgaagaagtaatatttttta 150

                                                                       
Query: 421 ggatcccctgttagtgtccttacgatcagatcctttgcagacattttgtaaaacctattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ggatcccctgttagtgtccttacgatcagatcctttgcagacattttgtaaaacctattc 90

                                                                       
Query: 481 ttagtagttctgtgaataggcgaggacctgagtttggatctctagagttcacacagggct 540
           ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||
Sbjct: 89  ttagtagttctgtgaataggtaaggacctgagtttggatctctaaagttcacacagggct 30

                                        
Query: 541 gtttggacttggtatatataccagtcctt 569
           | |||||||||||||||||||||||||||
Sbjct: 29  ggttggacttggtatatataccagtcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)