Query= MSMg01no422_h18.b1 MSMg01no422_h18.b1 CHROMAT_FILE:
MSMg01no422_h18.b1 PHD_FILE: MSMg01no422_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:56 2005
(508 letters)
>mm_chr1_70947368_70948275
Length = 908
Score = 884 bits (457), Expect = 0.0
Identities = 496/509 (97%), Gaps = 2/509 (0%)
Strand = Plus / Plus
Query: 1 gtatctgctataaagattccaattaagtaattccccacttctgccttccgtgttattatg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatctgctataaagattctaattaagtaattccccacttctgccttccgtgttattatg 260
Query: 61 agtggtggcctcttttctagtagaaattcttaaatactctaaaggctcccagtcaagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtggtggcctcttttctagtagaaattcttaaatactctaaaggctcccagtcaagatg 320
Query: 121 acaccttgaattagcacgtaaccatctctgacattcacatacagtgagtgctgctgggtt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaccttgaattagcacgtagccatctctgacattcacatacagtgagtgctgctgggtt 380
Query: 181 tgatattttaaaatggttaaagacgaacctaaaccttatacaaagcatccaatgtctaga 240
||||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct: 381 tgatatttttaaatggttaaaggcgaacctaaaccatatagaaagcatccaatgtctaga 440
Query: 241 aataaagtatttttaaaaaccaaaaaactaaacagataaaagtggattcatcaaactctg 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aataaagtatttttaaaaaccaaaaaactaaacagatataagtggattcatcaaactctc 500
Query: 301 aatcaatctaaacccagaaaagctcagaatatattcattcatgtgtgcacccatggtaaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 aatcaatctaaacccagaaatgctcagaatatattcattcatgtgtgcacccacggtaaa 560
Query: 361 atttccccagagattagctggtgaatag-tttttttctagggctgtcctttctctagtgt 419
||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct: 561 atttccccagagattagctggtgaa-aggtttttttctagggctgtcctttctccagtgt 619
Query: 420 caccacaggacaagtgcgcatagccacaatgtaaaagccgactctatctagataggataa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caccacaggacaagtgcgcatagccacaatgtaaaagccgactctatctagataggataa 679
Query: 480 atcatgctcacaaaatcacaggcaggaaa 508
|||||||||||||||||||||||||||||
Sbjct: 680 atcatgctcacaaaatcacaggcaggaaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_h18.g1 MSMg01no422_h18.g1 CHROMAT_FILE:
MSMg01no422_h18.g1 PHD_FILE: MSMg01no422_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:56 2005
(513 letters)
>mm_chr1_71104141_71105052
Length = 912
Score = 915 bits (473), Expect = 0.0
Identities = 503/513 (98%), Gaps = 1/513 (0%)
Strand = Plus / Minus
Query: 1 ctgatgcatggagagtattatttatatgtgatcatttggagttcacagaattttaagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctgatgcatggagagtattatttatatgtgatcatttggagttcacagaattttaagaga 653
Query: 61 tttttcttgatacaaggcattaaaggaatggttagaaatgatacatatggaagttattca 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tttttcttgatacaaggcgttaaaggaatggttagaaatgatacatatggaagttattca 593
Query: 121 tatattgtcaagaactacaaataattttataaccctgtgtcctgaaaataccttagttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tatattgtcaagaactacaaataattttataaccctgtgtcctgaaaataccttagttat 533
Query: 181 tattggtgctgcactgacccccacaccctcgctttaacagtttcccagttgtagtgtctc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tattggtgctgcactgaccctcacaccctcgctttaacagtttcccagttgtagtgtctc 473
Query: 241 cttccctctattgttcattgcctatgtctgatactggagtagtttcttccattgtatttt 300
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttccctctaatgtccattgcttatgtctgatactggagtagtttcttccattgtatttt 413
Query: 301 actgtcccatgtgctcatgtagtagaaggctgctttccatgtggtgtatacagctagctc 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 actgtcccatgtgttcatgtagtagaaggctgctttccatgtggtgtatacagctagctc 353
Query: 361 agcagccatattgctgttccttcctcgggctcttcccttcccgttcatctaccacatgcc 420
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 a-ccgccatattgctgttccttcctcgggctcttcccttcccgttcatctaccacatgcc 294
Query: 421 agtttccagtcttggcccaagaccatttcatttgccagtatatattccttacctttattt 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 293 agtttccagtcttggcccaagaccatttcatttgccagtatatattctttacctttattt 234
Query: 481 caccccattacttttctttgatatatatatgat 513
||||||||||||||||||||||||||| |||||
Sbjct: 233 caccccattacttttctttgatatatacatgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space: 453706
Effective search space used: 453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
