BAC Information

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BAC

Clone NameMSMg01-422I22
Chromosome1 (Build37)
Map Location 73,975,693 - 73,976,125
singlet/doubletsinglet
Overlap geneTns1
Upstream geneLOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
Downstream geneRufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422I22.T7 (MSMg01no422_i22.b1)MSMg01-422I22.TJ (MSMg01no422_i22.g1)
ACCAG516918AG516919
length737769
length of high quality
(start - end)		554 (65 - 618)434 (68 - 501)
definitionCHROMAT_FILE: MSMg01no422_i22.b1 PHD_FILE: MSMg01no422_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:01 2005CHROMAT_FILE: MSMg01no422_i22.g1 PHD_FILE: MSMg01no422_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTATACGACTCCTATATTTCANAAATCCGCGGAATTCAGGAC
CTTCTGACCAGCAGTCAGTGCTCTTACCAGCTGAACCATCTCACCAGCCC
CCAAACTGTTTTTTTTTAAAAGATTATAATATAATTACATTTCCCCCTTT
CCTTTCCACCCTCCAAAATCTTCCATATACCTTCCCCTGTTCTCCTTTAA
ATTTGTGGCTTCTTCATTCATTAACTGTTATTGTATGCATACATGCATAT
GAATATACATATATATTCCTAAGTAGACCCTGCTTAGACTATAATGTTAC
TTGTATGTATGTTTTCAGGGATGATCATTTAGCACTGAAACTGACTGGTG
TGCTCTTCCCTGTGCGAGAGGGACCGCCTTTCCAGCTCCCAGCTTTCCTC
TGTTTCTTACAGTTCTTTTCCTAAGACTGAAGCCTCCTCCATCCACTTTG
CCATGTTCCCTGGCATCATGCTTGTTCCACTCATGTTTGGGAAGTCATGT
TGGTGAGATATTATGAGTGTAGCTTCTGATGCCTCTAGGAGACATGATCC
CACAGCAAACTCCCTGATCCTCTGGCTCTTACAATTTCTCTTCCCCCTCT
TCAGCAGTGTCTCCTGAGCCTTAGGTACAGGAGTGTTTTGTAGATATATT
CACTGTGACTGAGATCTACAATTCTGCATTTTGGATGCTCAGCAACCTTT
TAATATCTACACACACACACACACACNCACACTCTCT

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTGGCAGAGAGCCGTGTCCATTCATTTGGCTG
TTGTTCACAGACCCTGTCATGCATGGCGACTGGCTTGAGTGATTGCGACA
GGGACCCTCTGACCTTCCCACCTAAGCTGTTTGCAAAGAATGTGACCAGC
TCTGCGTGCGTCACAGCATTTCCTCCTGCCTAGTGCCGGGGCCTGGGGAG
GTCAAAGTTCAAACCTTCTCTGTCAGATCGGCCTGTGTAGCCTGTGAAGT
GTGGTGAAGGCCTGTGCTGCTTATGGAGGCTCTGCCTGCTCTCCCCTCAA
GCTGACCTCCAGTTCAGTGTGCCCAGGTGGCGGCTCCTGCATCACCAGGG
TTTGGGTGTGGATGGTGGGGAGCCTCTTATGGAGTGTGTTCTCGACACCC
CAGGTAACTCCCTCTTTCCAGGTTTTCCTCCAGTTGAGGGAGCAAGCTAT
TAATTTATGTGTTTCAATGTTCCTTCCTCCACCTGTCCTGAGGAACCTTG
GAAGGGGCTCCTCCCACTTACGTCACTGCGCTTGGTCCTTCAGGGTTGCA
GTGCCTAACTTCTCCCAAGTTTGGTTCATTTTCCCTGCTTGTCTTCCGTG
GAAATTTGTTTTTTATTTCTCCCTTCCTCTTTTTTCTCCATAATTTGCTC
CACTGACATACTATACTGTACGGCTTCTATCTTTTTCCTTGCTATCATAT
ACCTCCCCCTTCTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_i22.g1 MSMg01no422_i22.g1 CHROMAT_FILE:
MSMg01no422_i22.g1 PHD_FILE: MSMg01no422_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:01 2005
         (434 letters)



>mm_chr1_73975493_73976325
          Length = 833

 Score =  754 bits (390), Expect = 0.0
 Identities = 423/434 (97%), Gaps = 1/434 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggcagagagccgtgtccattcatttggctgttgttcacagaccctgtcatgcatggc 60
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 633 tgtggcagacagccgtgtccattcatttggctgttgttcacggaccctgtcatgcatggc 574

                                                                       
Query: 61  gactggcttgagtgattgcgacagggaccctctgaccttcccacctaagctgtttgcaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 573 gactggcttgagtgattgcgacagggaccctctgaccttcccacctaagctgtttgcaga 514

                                                                       
Query: 121 gaatgtgaccagctctgcgtgcgtcacagcatttcctcctgcctagtgccggggcctggg 180
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaatctgaccagttctgcgtgcgtcacagcatttcctcctgcctagtgccggggcctggg 454

                                                                       
Query: 181 gaggtcaaagttcaaaccttctctgtcagatcggcctgtgtagcctgtgaagtgtggtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaggtcaaagttcaaaccttctctgtcagatcggcctgtgtagcctgtgaagtgtggtga 394

                                                                       
Query: 241 aggcctgtgctgcttatggaggctctgcctgctctcccctcaagctgacctccagttcag 300
           ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aggcctgcgctgctgagggaggctctgcctgctctcccctcaagctgacctccagttcag 334

                                                                       
Query: 301 tgtgcccaggtggcggctcctgcatcaccagggtttgggtgtggatggtggggagcctct 360
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 333 cgtgcccaggtggcggctcctgcatcaccagggcttgggtgtggatggtggggagcctct 274

                                                                       
Query: 361 tatggagtgtgttctcgacaccccaggtaactccctctttccaggttttcctccagttga 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 -atggagtgtgttctcgacaccccaggtaactccctctttccaggttttcctccagttga 215

                         
Query: 421 gggagcaagctatt 434
           ||||||||||||||
Sbjct: 214 gggagcaagctatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space:   350200
Effective search space used:   350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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