Query= MSMg01no422_m03.b1 MSMg01no422_m03.b1 CHROMAT_FILE:
MSMg01no422_m03.b1 PHD_FILE: MSMg01no422_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:17 2005
(256 letters)
>mm_chr1_66429048_66429704
Length = 657
Score = 455 bits (235), Expect = e-132
Identities = 250/255 (98%), Gaps = 3/255 (1%)
Strand = Plus / Minus
Query: 4 gaattcttggtct-t-cgcattatccctttcctttctcctaaccttgatgctggagcttg 61
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaattcttggtctgtgc-cattatccctttcctttctcctaaccttgatgctggagcttg 399
Query: 62 tcctcatcccttatgcctcaaagctatcaaaaacctttcagtgtagaatcccatcctcag 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcctcatcccttatgcctcaaacctatcaaaaacctttcagtgtagaatcccatcctcag 339
Query: 122 caagtcatattgtattcagctagatatataaatggtccttgttcaagagtgttgtcacca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 caagtcatattgtattcagctagatatataaatggtccttgttcaagagtgttgtcacca 279
Query: 182 ctgccatccacagtgagggaatctaacagataactatgtctggtaatactaatactgcct 241
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 278 ctgccatccacagtgagggaatctaacagataactatgtcttgtaatactaatactgcct 219
Query: 242 ttatacattttgttg 256
|||||||||||||||
Sbjct: 218 ttatacattttgttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 657
Length adjustment: 9
Effective length of query: 247
Effective length of database: 648
Effective search space: 160056
Effective search space used: 160056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no422_m03.g1 MSMg01no422_m03.g1 CHROMAT_FILE:
MSMg01no422_m03.g1 PHD_FILE: MSMg01no422_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:17 2005
(554 letters)
>mm_chr1_66297762_66298715
Length = 954
Score = 1071 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 1 tttgaatgcataaaatgctgaaagcaaaaatcggaactaattttgacatttattacacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaatgcataaaatgctgaaagcaaaaatcggaactaattttgacatttattacacgt 260
Query: 61 tttaaaaatgaaacctaaaatttactgtgaatttacaagttacttctacacaagcatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaaaatgaaacctaaaatttactgtgaatttacaagttacttctacacaagcatggt 320
Query: 121 gtgttgtaaagcgatctgtgtcagccagtacattttagggcacaataaacaagttgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttgtaaagcgatctgtgtcagccagtacattttagggcacaataaacaagttgttta 380
Query: 181 acgcctgccttggctttccttcttagacaaagaaaggctgacttacctgactgatttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgcctgccttggctttccttcttagacaaagaaaggctgacttacctgactgatttaat 440
Query: 241 ctaatggtgttatttttttttcttttccttttagatttatattgatctgaaccaacctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatggtgttatttttttttcttttccttttagatttatattgatctgaaccaacctat 500
Query: 301 attgtgactgctggcaagaattaaggtcagtgctgtgcttatattgattgtgaactagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtgactgctggcaagaattaaggtcagtgctgtgcttatattgattgtgaactagct 560
Query: 361 taaataagcttttgtaagggctttttgagtctttagcttgctggttcaggatattctgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaataagcttttgtaagggctttttgagtctttagcttgctggttcaggatattctgcc 620
Query: 421 cagagtgtgagcaagagcaggatcaagcatgaactgtatacatcacaccatggctcacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagagtgtgagcaagagcaggatcaagcatgaactgtatacatcacaccatggctcacta 680
Query: 481 ataaccaccattgttctcgccagtatgtgttttacattactttggttattgaatgtttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaccaccattgttctcgccagtatgtgttttacattactttggttattgaatgtttta 740
Query: 541 cctctgtcacctca 554
||||||||||||||
Sbjct: 741 cctctgtcacctca 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
