BAC Information

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BAC

Clone NameMSMg01-422M13
Chromosome1 (Build37)
Map Location 72,765,297 - 72,939,819
singlet/doubletdoublet
Overlap geneIgfbp2, Igfbp5
Upstream geneLOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
Downstream geneLOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422M13.T7 (MSMg01no422_m13.b1)MSMg01-422M13.TJ (MSMg01no422_m13.g1)
ACCAG517092AG517093
length761735
length of high quality
(start - end)
245 (60 - 304)192 (117 - 308)
definitionCHROMAT_FILE: MSMg01no422_m13.b1 PHD_FILE: MSMg01no422_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:18 2005CHROMAT_FILE: MSMg01no422_m13.g1 PHD_FILE: MSMg01no422_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,939,575 - 72,939,819)(72,765,297 - 72,765,487)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAATCCGCGGAATTCTATG
GTTTATCATATACCGCAGGCATACAACAAGCAAATGATAAATGTGACGTG
GTTTTGTTTCATTCAGAAGGCATCTGCTGAATGATTACTTTATATAAAGT
AGTGTAGGTGTTAGATAAAGAGGACAGCCTCATTTTAATGATTTTATGGG
CCGATGGAAGACACAGAATCTATGGAACATCTATGTCAGGCAGGATAACC
CTAAAATGATAGGGTTTTCTGATAGCAAACTAAAAGTTACTACTGAAGAA
AGATGAATGCCTTCCTACGTGGCCACTTTGTGAGTGTTACCTAATCTAAG
GAGGATTATCAGGCGGAGTCTGGTCTTTCCTTTTCTACACCATGATACCC
TCAGTCATAATGGAACAAACTTTCTTGACCGATATTAAGATTTCTGCAAA
ATAGGACCTAAGACATGGCTCAACATATAAGGGCACTTGCCACCAGCCTG
ATAACTTGCTTTTGTTCCCCCAGATATACCTGGTTAATGGAGTAATCCTT
CCCCCTAAAGCCTATGCTTCTATCCTTCACATGGTTTTGCCCTAGTCACA
TGTAACCCCTTATGCTACATATTATTCCCCGTTACTTTTTCTCCTTCTTG
CGCCTATAACCCGCTAACAATTTTTTGTCTCTTATATCCCCCTCCCCTGT
CAATGTCCCCCCCTGCTTTTCCCCCTTTGTTGTCTCCTCAATTTTGTCAC
TATATCCTCTG
TGGTAGGCCAGGAGGNCGGCGGGTTTCGAACCGGGGNNGAACNANAGAAG
GTTACAAGACTTGTTTCCCCCTTNNANAGAGGACAAAACCTCGAAGAGTT
TCTACTTGTAGACCAGAGTCATTGAATGGGGAAAGAATGAACTCCACAAG
GAGTTCCGTGCTTCAACTTCACCTCCCCGTTCACTGGCTTGGGCAACAGA
AGAGCTTTGTTCTCTATAGATAAAGAAACCAAGGTACAGAGTGTTATCTG
TGAGGGGTTTTGATGGTTGGAGGCCAGTCTCAGCAAGTGATAAGTATATA
ACGCTAATTTTTTTTTTTTGACAGGCAGGAGAGAAAGGGCCACTAGGATT
CTGCTGATTAAACCGGTGCAGGCAAAAGGAGCATAGGTAGTGAACAGCAG
GGGGAGCCCTTGCTGAGGCTGAGAGGACTTGGAGGGATCAGAGTGCTTCT
CTTTCTCCCGCTCTTAACTTTGCTCGGTGCTCAGGCATGACTTCCCTGAT
GAGAGTGTCCACAGCACACTTATAGCCCTGCTGCTTTCCTAGGCCAGTGA
AATGCGTGTCCTTTTTCCTCAGGAGCGTAGTTCATCATATACCAGGAACT
TGTATCGCATGATCTCTGGTCAATGATCCTGTGTTCTTGAATAAAAAATT
GTTTTTTTTTTTTTACTCACACCCTGCAATTGTACCTCTCTCTTTTTTTG
ACTTTTTCACTTTTTTCCTCATCTTCTCCCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_m13.b1 MSMg01no422_m13.b1 CHROMAT_FILE:
MSMg01no422_m13.b1 PHD_FILE: MSMg01no422_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:18 2005
         (245 letters)



>mm_chr1_72939375_72940019
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataccgcaggcatacaacaagcaaatgataaatgtgacgtggttttgtttcattcagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataccgcaggcatacaacaagcaaatgataaatgtgacgtggttttgtttcattcagaag 386

                                                                       
Query: 61  gcatctgctgaatgattactttatataaagtagtgtaggtgttagataaagaggacagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatctgctgaatgattactttatataaagtagtgtaggtgttagataaagaggacagcc 326

                                                                       
Query: 121 tcattttaatgattttatgggccgatggaagacacagaatctatggaacatctatgtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcattttaatgattttatgggccgatggaagacacagaatctatggaacatctatgtcag 266

                                                                       
Query: 181 gcaggataaccctaaaatgatagggttttctgatagcaaactaaaagttactactgaaga 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaggagaaccctaaaatgatagggttttctgatagcaaactaaaagttactactgaaga 206

                
Query: 241 aagat 245
           |||||
Sbjct: 205 aagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no422_m13.g1 MSMg01no422_m13.g1 CHROMAT_FILE:
MSMg01no422_m13.g1 PHD_FILE: MSMg01no422_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:18 2005
         (192 letters)



>mm_chr1_72765097_72765688
          Length = 592

 Score =  354 bits (183), Expect = e-102
 Identities = 189/191 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcattgaatggggaaagaatgaactccacaaggagttccgtgcttcaacttcacctcc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcattgaatggggaaagaatgaagtccacaaggagttccgtgcttcaacttcacctcc 260

                                                                       
Query: 61  ccgttcactggcttgggcaacagaagagctttgttctctatagataaagaaaccaaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgttcactggcttgggcaacagaagagctttgttctctatagataaagaaaccaaggta 320

                                                                       
Query: 121 cagagtgttatctgtgaggggttttgatggttggaggccagtctcagcaagtgataagta 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagtggtatctgtgaggggttttgatggttggaggccagtctcagcaagtgataagta 380

                      
Query: 181 tataacgctaa 191
           |||||||||||
Sbjct: 381 tataacgctaa 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)