BAC Information

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BAC

Clone NameMSMg01-422O07
Chromosome1 (Build37)
Map Location 75,831,555 - 75,831,982
singlet/doubletsinglet
Overlap genenone
Upstream geneWnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422O07.T7 (MSMg01no422_o07.b1)MSMg01-422O07.TJ (MSMg01no422_o07.g1)
ACCAG517176AG517177
length764750
length of high quality
(start - end)
78 (156 - 233)428 (64 - 491)
definitionCHROMAT_FILE: MSMg01no422_o07.b1 PHD_FILE: MSMg01no422_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:26 2005CHROMAT_FILE: MSMg01no422_o07.g1 PHD_FILE: MSMg01no422_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGCGGAATTCATCA
GAATTCCCAGAAATTAGAATGGGGAAACAAAAACATTTTATAACCCTATC
TCACGCCGCTGGCGGAAATAACGACCAGATGCGCTAAAGGATAGAATGTA
GAAGAATTAAGCCACAGGAAGAAACTGAAGCAAATGTTTGTCAAATCTCT
AGAGTGAAAAGGAATTTCCGAGCTTAAAAGCTTATAACAAGCCACTTTGT
AAAGCTACTCAGACTTAACCGCATCAAAACTGTAAACCTGCAAATAAAGA
GATAAAGGAATTAACTCTTTGAGGTAAATGGACAAGCGCATTTGCATAGC
TGATTACATGTAACTGGTTGGCAAAACATATGAAACATAGAAGCTATGTA
GTAATCATAAAACCCTAGTTAATCCATGATAGCGAACCTCATCTGTCCAT
TTAAGAATGAGCTTCCCTCTCTGACAGTGATTCCCTGCTGAACAGTTACT
CCTATTCTCCACTAGACCTTATGCTGACGATCTTATTCCGTCTATGCCTA
ATCTTTTTCCCCGCATCAACATCGATCTTGTTTTGACTGTTTTTACATTT
CCCCATGGCCTTGCGTAATCCTTACTATTGTAATCCGGTATTCATGGTTC
ATATTCCCTAAACACGCCTTTTTTCAATTTAATTCAATCCATCCCCGACA
CATCAATTAAGTTCCATCTCCCATTTACAATTTTCCTCACCCTCTTTCTC
CTACATTTTTCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGGGGAACAGAAGGAAGTTTATTAGGGAATGCCACA
TTTTGAACTGGACACTGTAAGTTGTTTATATTCCCAAAGCAAAAATGGTA
GATCAGCAACGATCCCTATAAAGAGGAGGATGCATGGGACCCAAGGAGAA
GGGACACGATACCTGGAAGCCACATGATGTTCAGCAGTTTTAACTGAGAG
CCACCTATCATCAATCTTCTCTTGTTACTGCTTCTTGGACCCAGTGCCAA
GTGAGGCGTTTGTTGTTAGATGCCACCATAAGCCCTCTCTGCACACTCAG
TGTGTGGAGACACTGACCATAGAGGATCGCTCAGGTGAAGGGGGTCTCTA
TTCAGACCACCAAGTAGGAAACCTGGCAAAGTGAGCAGCACTGTTAGGCA
CCTGGCCATGACAGGGCTATGCTGTTGTGTGAGAGAGATTACAACAGAGA
GAATTCTGGTTTGATCCTAGGCTAGGTGAAGGTGTGTGTTTATAGGTGAT
GATAGCTGCAATTCTTAAATCCCTTCTCTCTCTCTTCTTCCTAATATTTC
TCTACACTTCCCTCTTTATTTTTCTTCCCCATTTCGAAGTTCCTAGATTT
TCTTTATTTTTCTTCCTTTTCTCTCTACCATCTTTTTCTTCTTTCTCTTA
CCTCATTCCTCTATTTTCTTTCTTTTATCTTCCCTTGTTTCATCTTCTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_o07.g1 MSMg01no422_o07.g1 CHROMAT_FILE:
MSMg01no422_o07.g1 PHD_FILE: MSMg01no422_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:26 2005
         (428 letters)



>mm_chr1_75831355_75832182
          Length = 828

 Score =  804 bits (416), Expect = 0.0
 Identities = 425/428 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggggaacagaaggaagtttattagggaatgccacattttgaactggacactgtaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggggaacagaaggaagtttattagggaatgccacattttgaactggacactgtaagtt 260

                                                                       
Query: 61  gtttatattcccaaagcaaaaatggtagatcagcaacgatccctataaagaggaggatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttatattcccaaagcaaaaatggtagatcagcaacgatccctataaagaggaggatgc 320

                                                                       
Query: 121 atgggacccaaggagaagggacacgatacctggaagccacatgatgttcagcagttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggacccaaggagaagggacacgatacctggaagccacatgatgttcagcagttttaa 380

                                                                       
Query: 181 ctgagagccacctatcatcaatcttctcttgttactgcttcttggacccagtgccaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagagccacctatcatcaatcttctcttgttactgcttcttggacccagtgccaagtg 440

                                                                       
Query: 241 aggcgtttgttgttagatgccaccataagccctctctgcacactcagtgtgtggagacac 300
           |||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcgggtggtgttagatgccaccataagccctctctgcacactcagtgtgtggagacac 500

                                                                       
Query: 301 tgaccatagaggatcgctcaggtgaagggggtctctattcagaccaccaagtaggaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaccatagaggatcgctcaggtgaagggggtctctattcagaccaccaagtaggaaacc 560

                                                                       
Query: 361 tggcaaagtgagcagcactgttaggcacctggccatgacagggctatgctgttgtgtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcaaagtgagcagcactgttaggcacctggccatgacagggctatgctgttgtgtgag 620

                   
Query: 421 agagatta 428
           ||||||||
Sbjct: 621 agagatta 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)