Query= MSMg01no423_d16.b1 MSMg01no423_d16.b1 CHROMAT_FILE:
MSMg01no423_d16.b1 PHD_FILE: MSMg01no423_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:51 2005
(467 letters)
>mm_chr1_29619487_29620353
Length = 867
Score = 857 bits (443), Expect = 0.0
Identities = 461/467 (98%)
Strand = Plus / Minus
Query: 1 caaagggctgagaagcacctgaaaaaaatgttcaaccaatcatccttaaccatcagggaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 735 caaagggctgagaagcacctgaaaaaaatgttcaaccaaccatccttaaccatcagggaa 676
Query: 61 atgtaagtaggttatttgtatgatagtcataatatgttcatctttatacaagctaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atgtaagtaggttatttgtatgatagtcataatatgttcatctttatacaagctaaattt 616
Query: 121 tgcaaagcacatcttactttgttgacatatattgaatgatttgtacaaacacaaatttga 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 615 tgcaaagcacatcttactttgttgacatatgttgaatgatttgtacaaacacaaatttga 556
Query: 181 ataatttcatttattttatctcaagttgttacagctatagtgatatagaagtataatata 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 555 ataatttcatttattttatctcaaattgttacagctatagtgatatagaagtataatata 496
Query: 241 gagtatacaaaatatttaactttgaaatggcataattacacacatatatatgtcttatct 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 495 gagtatacaaaatatttaactttgaaatggcataattacacaaatatatatgtcttatct 436
Query: 301 atgtagttttactgtagaactctcattacttgacatgtattcacacaaagcattaatgac 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 435 atgtagttttactgtagaactctcattacttgacatgtatacacacaaagcattaatgac 376
Query: 361 tttaaacagtgttaacaagaaaaactaacattgaagctattatattcacatcctgcatcc 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttaaaaagtgttaacaagaaaaactaacattgaagctattatattcacatcctgcatcc 316
Query: 421 aagggagaatgagtagtttctcaaaaaaattaccagacagcttaatt 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagggagaatgagtagtttctcaaaaaaattaccagacagcttaatt 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_d16.g1 MSMg01no423_d16.g1 CHROMAT_FILE:
MSMg01no423_d16.g1 PHD_FILE: MSMg01no423_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:52 2005
(477 letters)
>mm_chr1_29442485_29443361
Length = 877
Score = 884 bits (457), Expect = 0.0
Identities = 475/487 (97%), Gaps = 10/487 (2%)
Strand = Plus / Plus
Query: 1 attttctattgctctaagcacatcccggtgttatcaattggagaaccagctatcaataca 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 191 attttctattgctctaagcacattccggtgttatcaattggagaaccagctatcaataca 250
Query: 61 ggatttagggaatctgttagatcaaactatagatcaccaagtaaagtgtatgaccattcc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 251 ggatttagggaatctgttagatcaaactatagatcaccaagtaaaatgtatgaccattcc 310
Query: 121 acaatgcacgatatattcacatactttccaagaatccccatcatcatagtcatccaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acaatgcacgatatattcacatactttccaagaatccccatcatcatagtcatccaatct 370
Query: 181 cagtttcctctgtaattgaagtaaatctaaggaggctacatggctctcagagaaggacgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagtttcctctgtaattgaagtaaatctaaggaggctacatggctctcagagaaggacgc 430
Query: 241 actattttggggtgcagctgtggtaggaaggaaggagcagatattaggatgtaaagtcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actattttggggtgcagctgtggtaggaaggaaggagcagatattaggatgtaaagtcag 490
Query: 301 tacatacatacatacatacatacatacatacatacatacatacata----------taaa 350
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 491 tacatacatacatacatacatacatacatacatacatacatacatacatacacatataaa 550
Query: 351 tgcaaaaaagctaaaatcaactataaattgtgaacttgtaacttaacattaactttaagg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgcaaaaaagctaaaatcaactataaattgtgaacttgtaacttaacattaactttaagg 610
Query: 411 acgaatatttagttagattgatgatatatatttgagcctaaggtcaggaggcctcattcc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 acgaatatttagttagattgatgatatatatttgagcctaaggtcaggaggcctcattcc 670
Query: 471 atactga 477
|||||||
Sbjct: 671 atactga 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
