Query= MSMg01no424_h05.b1 MSMg01no424_h05.b1 CHROMAT_FILE:
MSMg01no424_h05.b1 PHD_FILE: MSMg01no424_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:25 2005
(567 letters)
>mm_chr1_73212144_73213110
Length = 967
Score = 992 bits (513), Expect = 0.0
Identities = 550/563 (97%)
Strand = Plus / Minus
Query: 5 gaattctctgtttctgattgaaaagacataaagttacagaaaggaccattgtgacgatgc 64
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 767 gaattctctgtaagtgattaaaaagacataaagttacagaaaggaccattgtgacaatgc 708
Query: 65 ccatgtagcccagccacactccaggctgtcaccaaccacaaaggcagaaaggcactgacc 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 707 ccatgtagcccagccacactccaggctgtcaccgaccacaaaggcagaaaggcactgacc 648
Query: 125 ctaaaatgcaatttcttattactatcattactgattagtggcagaaagaagacagggggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ctaaaatgcaatttcttattactatcattactgattagtggcagaaagaagacagggggg 588
Query: 185 actgagaggactcatttaaaattcctaggtcaggttgagtcagcttggacacctacatgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 587 actgagaggactcatttaaaattcctaggtcaggttgagtcagcttggacacccacatgc 528
Query: 245 ttgtctttgtcagttcaaagactggttccattgttactgagagtgtaacaaggaaacacc 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 527 ttgtctttgtcagttcaaagactggttccattggtactgagagtgtaacaagggaacacc 468
Query: 305 cctcccaggtataattgtttgcctgtaggtcccagaaggggcattgaagctgtgaaggta 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 467 cctcccaggtataattgtttgcctgtaggtcccagaagggccattgaagctgtgaaggta 408
Query: 365 ttttcacatcctccaagagtaagccttgaagtttctgtactgcctctagagatacatgtt 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 407 ttttcacatcctccaagagtaagccttgaagtttctgtactgcctctagagataaatgtt 348
Query: 425 ctcagattaaatgccatggcacctttaaataagttatagcaagaggtttctgatagcaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctcagattaaatgccatggcacctttaaataagttatagcaagaggtttctgatagcaca 288
Query: 485 atcctaaattttatcctanattgaagtanacattggtcactgttcataaaataagaaagc 544
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 287 atcctaaattttatcctaaattgaagtaaacattggtcactgttcataaaataagaaagc 228
Query: 545 tatgaagcccatgaatatgctag 567
|||||||||||||||||||||||
Sbjct: 227 tatgaagcccatgaatatgctag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_h05.g1 MSMg01no424_h05.g1 CHROMAT_FILE:
MSMg01no424_h05.g1 PHD_FILE: MSMg01no424_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:25 2005
(273 letters)
>mm_chr1_73048031_73048701
Length = 671
Score = 468 bits (242), Expect = e-136
Identities = 264/272 (97%), Gaps = 4/272 (1%)
Strand = Plus / Plus
Query: 1 cttgcgtag-ctccacagtccatcctttcagtcacacccgattgtgctggggttgacaag 59
||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgcgtagtc-ccacagtccatcccttcagtcacacccgattgtgctggggttgacaag 259
Query: 60 cgagcaagagtacccactgcagagtaacttgcgttgctctggccttgcctgaagaatttg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cgagcaagagtacccactgcagagtaacttgcgttgctctggccttgcctgaagaatttg 319
Query: 120 atgacagagttaggatttagatcccagtctttgctttcctgagcaagtgtctcttagtct 179
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 320 atgacagagttaggatttagatcccagtct--gctttcctgagcaagggtctcttagtct 377
Query: 180 tggaggtttggtttcctggccttgttgatctgtgctgtcttatcccaggtgactttggtt 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 378 tggaggtttggtttcctggccttgttgatttgtgctgtcttatcccaggtgactttggtt 437
Query: 240 gtcagttatgtagggggttggagtgttggggg 271
||||||||||||||||||||||||| ||||||
Sbjct: 438 gtcagttatgtagggggttggagtggtggggg 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 671
Length adjustment: 9
Effective length of query: 264
Effective length of database: 662
Effective search space: 174768
Effective search space used: 174768
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
