Query= MSMg01no424_l06.b1 MSMg01no424_l06.b1 CHROMAT_FILE:
MSMg01no424_l06.b1 PHD_FILE: MSMg01no424_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:43 2005
(583 letters)
>mm_chr1_102109666_102110646
Length = 981
Score = 1031 bits (533), Expect = 0.0
Identities = 567/579 (97%), Gaps = 2/579 (0%)
Strand = Plus / Plus
Query: 5 gaattcttactgatctagcctttgaggaccctcatcccagggacccccatatccgactgg 64
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaatccttactgatctagcctttgaggaccctcgtcccagggacccccatatccgactgg 264
Query: 65 cgtggtctgtggcaagtgtttgttccgatgtaaagttataaccattctgcattttgtgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgtggtctgtggcaagtgtttgttccgatgtaaagttataaccattctgcattttgtgcc 324
Query: 125 acaataaatatttagctactctctagaatattcctacatccattcttgtatctgtgtaaa 184
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct: 325 acaataaatatttagctattctctagaatattcctacctccattcttgtatctgtgcaaa 384
Query: 185 agaatttaaggttttacttaaaggtgtaattttcaattctgagttctctactactcagca 244
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 385 agaatttaaggttttacttaaaggtgtaa--ttcaattctgagttctctacgactcagca 442
Query: 245 tgtctggatggttttcaaatcatttaactgtgacagtaataggactttagcatatccatt 304
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 tgtctgaatggttttcaaatcatttaactgtggcagtaataggactttagcatatccatt 502
Query: 305 tcctgttgctcctgtttttgcttgcctgtctgtttcaaccatcttggcttaattgctttg 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 503 tcctgttgctcctgtttttgcttgcctgtctgtttcaaccatcttggcttgattgctttg 562
Query: 365 catttcctcccattaggtgtttccccaactattgtgaacatggaggacactgtactcaaa 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 catttcctcccattaggtgtttccccaactactgtgaacatggaggacactgtactcaaa 622
Query: 425 cctggacaaacttctactgcaactgcagtaatactggttacacaggagccacctgtcatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cctggacaaacttctactgcaactgcagtaatactggttacacaggagccacctgtcatg 682
Query: 485 attgtgagtacacaaaatgtgcctacagtatgtagatacaactccaggaatgcagtgtgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attgtgagtacacaaaatgtgcctacagtatgtagatacaactccaggaatgcagtgtgg 742
Query: 545 ggaccctggctactcaccacattgtgagcactgtctata 583
|||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaccctggctactcaccacattgtgagcactgtctata 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 981
Length adjustment: 10
Effective length of query: 573
Effective length of database: 971
Effective search space: 556383
Effective search space used: 556383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_l06.g1 MSMg01no424_l06.g1 CHROMAT_FILE:
MSMg01no424_l06.g1 PHD_FILE: MSMg01no424_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:43 2005
(263 letters)
>mm_chr1_102153596_102154258
Length = 663
Score = 412 bits (213), Expect = e-119
Identities = 256/285 (89%), Gaps = 25/285 (8%)
Strand = Plus / Minus
Query: 1 tgggcacaccaaacacacatatatctgaagggtgacctttcacttcagaaggtcaaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgggcacaccaaacacacatatatctgaagggtgacctttcacttcagaaggtcaaatct 298
Query: 61 ctaccatcagactatgtgtctcagatgtgtgtcctttacaacatctcagcctagtagttc 120
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 297 ctaccatcagactatgtgtttcagatgtatgtcctttacaacatctcagcctagtagttc 238
Query: 121 cttggatatctatttctattatgtagcttctctgtg--ttctctctctctctctctctct 178
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 237 cttggatatctatttctattatgtagcttctctgtgttttctctctctctctctctctct 178
Query: 179 ctctctctctctctctc-----------------ctcc------gtgtgtgtgtgtgtgt 215
||||||||||||||||| |||| ||||||||||||||||
Sbjct: 177 ctctctctctctctctctgtctgtctctatctctctcccagtatgtgtgtgtgtgtgtgt 118
Query: 216 gtgtgtgtgtgtgtgtgtgtgtgagagagatatagagagagagag 260
|||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 117 gtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagag 73
Score = 76.1 bits (39), Expect = 2e-18
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 157 ttctctctctctctctctctctctctctctctctctctc 195
|||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ttctctctctctctctctctctctctctctctctctctc 83
Score = 74.2 bits (38), Expect = 8e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 158 tctctctctctctctctctctctctctctctctctctc 195
||||||||||||||||||||||||||||||||||||||
Sbjct: 48 tctctctctctctctctctctctctctctctctctctc 85
Score = 74.2 bits (38), Expect = 8e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 158 tctctctctctctctctctctctctctctctctctctc 195
||||||||||||||||||||||||||||||||||||||
Sbjct: 50 tctctctctctctctctctctctctctctctctctctc 87
Score = 74.2 bits (38), Expect = 8e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 158 tctctctctctctctctctctctctctctctctctctc 195
||||||||||||||||||||||||||||||||||||||
Sbjct: 52 tctctctctctctctctctctctctctctctctctctc 89
Score = 74.2 bits (38), Expect = 8e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 158 tctctctctctctctctctctctctctctctctctctc 195
||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tctctctctctctctctctctctctctctctctctctc 91
Score = 74.2 bits (38), Expect = 8e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 158 tctctctctctctctctctctctctctctctctctctc 195
||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tctctctctctctctctctctctctctctctctctctc 93
Score = 74.2 bits (38), Expect = 8e-18
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 158 tctctctctctctctctctctctctctctctctctctc 195
||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tctctctctctctctctctctctctctctctctctctc 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 10
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space: 166116
Effective search space used: 166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
