Query= MSMg01no424_l10.b1 MSMg01no424_l10.b1 CHROMAT_FILE:
MSMg01no424_l10.b1 PHD_FILE: MSMg01no424_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:44 2005
(577 letters)
>mm_chr1_14564415_14565386
Length = 972
Score = 1073 bits (555), Expect = 0.0
Identities = 570/577 (98%), Gaps = 5/577 (0%)
Strand = Plus / Minus
Query: 1 gcaatacaatcagaatggcttatgtcattttctgaaatttttcttttgaaattaaattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gcaatacaatcagaatggcttatgtcattttctgaaatttttcttttgaaattaaattac 713
Query: 61 tgtttgatgcttcccaaagttgatttgtgggtaagggtctagactaagagaaatctgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tgtttgatgcttcccaaagttgatttgtgggtaagggtctagactaagagaaatctgctt 653
Query: 121 ttatttttgagtgatagcaacatgaaagaaacatagttttacctctggtgccttttcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttatttttgagtgatagcaacatgaaagaaacatagttttacctctggtgccttttcttt 593
Query: 181 ttcttcttttaaattactcaaatacatccaaacctcagggcatcagatagtcattttagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttcttcttttaaattactcaaatacatccaaacctcagggcatcagatagtcattttagg 533
Query: 241 aagagctcaatgagaaaagcaaattgtgaaaagctagccaagctttaatgaagtgatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aagagctcaatgagaaaagcaaattgtgaaaagctagccaagctttaatgaagtgatttg 473
Query: 301 aaaactccagactacttgtatgaactagaagactgtattggctgaaataatgaagccctt 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 472 aaaactccagactacttgtatgaactagaagactgtattggctaaaataatgaagccctt 413
Query: 361 ggcaaagttcactacagcacatcaagatgtatgccaaccgttccccgcccccccgacaca 420
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 412 ggcaaagttcactacagcacatcaagatgtatgccaac----cccc-cccccccgacaca 358
Query: 421 actgcaaaaataatccatcaatttaagtaacaggacaatttgaacttgaaaaaaattaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 actgcaaaaataatccatcaatttaagtaacaggacaatttgaacttgaaaaaaattaaa 298
Query: 481 ctgtacagttgattgaaatggttgttcgacaagttttttcaatgtctatttagctttgtc 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 297 ctgtacagttgattgaaatggttgttggacaagttttttcaatgtctatttagctttgtc 238
Query: 541 tgggataaaggggtcagaaattttgtgtggaaaaaga 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 tgggataaaggggtcagaaattttgtgtggaaaaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 972
Length adjustment: 10
Effective length of query: 567
Effective length of database: 962
Effective search space: 545454
Effective search space used: 545454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_l10.g1 MSMg01no424_l10.g1 CHROMAT_FILE:
MSMg01no424_l10.g1 PHD_FILE: MSMg01no424_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:44 2005
(519 letters)
>mm_chr1_14383718_14384640
Length = 923
Score = 959 bits (496), Expect = 0.0
Identities = 515/524 (98%), Gaps = 6/524 (1%)
Strand = Plus / Plus
Query: 1 aacctgcttgaattaaatgctcaatcctttacgttttttatgaatcaacactagacaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctgcttgaattaaatgctcaatcctttacgttttttatgaatcaacactagacaatc 260
Query: 61 cccggtcagatatagtcctaggtattgaaaaaaaggcataagtaggagaggctactctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccggtcagatatagtcctaggtattgaaaaaaaggcataagtaggagaggctactctct 320
Query: 121 attgtttaaggcttagaagagagaaaagttgtagacatataggtatgtttcaatgggaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 attgtttaaggcttagaagagagaaaagttgtagacatataggtatgtttcaaagggaat 380
Query: 181 gcggactggatgtttcttccattgggaaagtgtccttgacattttttttt-----aattc 235
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gcggactggatgtttcttccattgggaaagtgtccttgacattttttttttttttaattc 440
Query: 236 actgactctctctgccaaaggccacacctacccacatagctaatatgtgatgtacaacct 295
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgactctc-cagccaaaggccacacctacccacatagctaatatgtgatgtacaacct 499
Query: 296 ctctacctctttgcttcacctggaaagtactcatccacagtgctgtgagatcaaataaaa 355
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 ctctacctctttgcttcacctggaaagtactcatccacaatgctgtgagatcaaataaaa 559
Query: 356 cagtgcatacactgtgcttttctgatgtagacatctggtatataccagcagctcccatag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagtgcatacactgtgcttttctgatgtagacatctggtatataccagcagctcccatag 619
Query: 416 ccttaaatattgcacctcagccaaacaaagcatttcatgaaagctgacatcatttgtgtg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccttaaatattgcacctcagccaaacaaagcatttcatgaaagctgacatcatttgtgtg 679
Query: 476 tatggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 519
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 923
Length adjustment: 10
Effective length of query: 509
Effective length of database: 913
Effective search space: 464717
Effective search space used: 464717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
