Query= MSMg01no425_c12.b1 MSMg01no425_c12.b1 CHROMAT_FILE:
MSMg01no425_c12.b1 PHD_FILE: MSMg01no425_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:17 2005
(553 letters)
>mm_chr1_181057818_181058770
Length = 953
Score = 955 bits (494), Expect = 0.0
Identities = 540/562 (96%), Gaps = 12/562 (2%)
Strand = Plus / Plus
Query: 1 accttctcatggcatcttaaaaacaaaaacaaacaaacaaacaaaaaaatctgaggagat 60
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 195 accttctcatggcatcttgaaaacaaaaacaaacaaacaaa---aaaaatctgaggagat 251
Query: 61 caaaagaccagcactgagtcctgcaaccagatgcccacccacagcaggtttttttttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 caaaagaccagcactgagtcctgcaaccagatgcccacccacagcaggtttttttttttt 311
Query: 121 t---------aatttttgactttttgtcttaaaaacgacatcgtgttttcttttgtcgga 171
| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 312 ttttttttttaatttttgactttttgtcttaaaaacaacatcgtgttttcttttgtcgga 371
Query: 172 ggccttctgtgtggaggcgttaatgacatctcgcacatatgagcaagtctcctatgcagg 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggccttctgtgtggaggcgttaatgacatctcgcacatatgagcaagtctcctatgcaga 431
Query: 232 tggatggatgcttgtccgatgttcttgcttattctgaaggatatgatctcaggaaccttt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tggatggatgcttgtccgatgttcttgcttattctgaaggatatgatctcaggaaccttt 491
Query: 292 cgagagcagctaatgaaggcgcaaagaaatcacaattgttcaaaacttcaaactcctgga 351
|||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 492 cgagagcagctaataaaggcgcaaagaaatcacaactgttaaaaacttcaaactcctgga 551
Query: 352 taacgacagttcagacatgaggtgggatggaactgtcttggctgcaaggaatccgttgtc 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 552 taacgacagttcagacatgaggtgggatggaactgtcttggctgcaaggaatccgtcatc 611
Query: 412 aacaagtagaacagtttgctcctgatgagaaagaaccgggacaggaatggaaagaagggg 471
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 612 aacaagtagaacagtttgctcctgatgagaaagaacggggacaggaatggaaagaagggg 671
Query: 472 agaacagacaaacatttcaacttgaaacttatccttgtagttcagccaggaagcctagat 531
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agaacagacaaacgtttcaacttgaaacttatccttgtagttcagccaggaagcctagat 731
Query: 532 ggtggtatttctaagcctagaa 553
||||||||||||||||||||||
Sbjct: 732 ggtggtatttctaagcctagaa 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_c12.g1 MSMg01no425_c12.g1 CHROMAT_FILE:
MSMg01no425_c12.g1 PHD_FILE: MSMg01no425_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:17 2005
(576 letters)
>mm_chr1_181214645_181215620
Length = 976
Score = 665 bits (344), Expect = 0.0
Identities = 356/360 (98%)
Strand = Plus / Minus
Query: 1 taggtcctatcaagtggacaattaaatattagctaccacactgctttaaaagtctcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taggtcctatcaagtggacaattaaatattagctaccacactgctttaaaagtctcttct 301
Query: 61 atcttttgaaagtagaaagggaggggacagaagctatgtcttttctacctcttcttctct 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atcttttgaaaatagaaagggaggggacagaagctatgtcttttctacctcttcttctct 241
Query: 121 gcctttgactcccagtcacagtctggattgcctccactgttctaagtgtcctctctatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcctttgactcccagtcacagtctggattgcctccactgttctaagtgtcctctctatgg 181
Query: 181 ctgtgataacactcggaccaagagcaactaaggggaggaaaggctttatttgacttgtac 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctgtgataacacttggaccaagagcaactaaggggaggaaaggctttatttgacttgtac 121
Query: 241 tgccaggtcacagcccatcatcgagggaagttaggccaggaactcaagcaggaacttgac 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgccaggtcacagcccatcattgagggaagttaggccaggaactcaagcaggaacttgac 61
Query: 301 acagaaacattgagggacgtctcttgctgcttactcaagggctcattcttagctggtctt 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 acagaaacattgagggatgtctcttgctgcttactcaagggctcattcttagctggtctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
