BAC Information

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BAC

Clone NameMSMg01-425D14
Chromosome1 (Build37)
Map Location 41,280,851 - 41,281,163
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425D14.T7 (MSMg01no425_d14.b1)MSMg01-425D14.TJ (MSMg01no425_d14.g1)
ACCAG518957AG518958
length761769
length of high quality
(start - end)		520 (35 - 554)251 (64 - 314)
definitionCHROMAT_FILE: MSMg01no425_d14.b1 PHD_FILE: MSMg01no425_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:23 2005CHROMAT_FILE: MSMg01no425_d14.g1 PHD_FILE: MSMg01no425_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCTT
TATAGCTGGGCATGGTGGTATACTCCTTTAAACCCAGCACTCAGGAGGTA
GAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTATAAAGTGAGT
TCCAGAACATCCAAGGCTATACAGAGAAACCTTGTCTCGAAAAACCAAAA
AAAAAAAAAAAAAAAAAACAGAATTCTTTGTTTAGCTTTGTACCACATTT
TTAATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTAAGTTCTTTGTA
TATATTGGATACTAGTCCTCTATTGAATGTAGGGTTGGTAAAAATCTTTT
CCCTAACTGTTGGTTGCCATTTTGTCCTACTGGCAGTGTCATTTGCCTTA
CAGAAACTTTGTAAAACTATTTTTATGACATATCAATAGTTATGGTAGAT
GAATATGATCAGTGCTGCTTCACTGAGTAAGGCAGCCTTTGAAGAGTTTT
CTACAATCGTACAAATTTAGGGAAGGACTGTCACCTGTACAATTTCTTTT
CAGTCCATGAGAAATGTTAAGTCCCTGGGAACTTCTGTAGGAAGGAAATT
GGTTTAAATGTTGGAAATCATGTTTATCTCCATTATATATTTTATTTATC
ACCAGGAAGTGGACTAACCTAATAAGATGGCCTTCAAAACTCTATAGACC
TGTAATTATTTCCTGGGAATAGAAAGTTCCCAAAACTGAATAAACCCTAC
CCTTGAAGGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGGAACTCTTGGGAGCTACACTCCCTCTGCCCTCTT
AGCTGCTGCTGGTTTCTATTGCTGGGATTTTTCAAGTGGTCTTAAGGATA
TGAGAAAAAGAATTTGGAAATATTCTGACAGTGAACAGACAACCAAGGAC
CCAATGTTCCTAATCAGCAGGAAGTAATCTAAAGAAGTCTCCATCCCCTT
ACCCCTCTAATCTTTCTCTCCTACCTAGTGCTTGGAGGATAGAGGGATTA
GGGTGGAATATTTTTTTTTTTTNNNNNNTTNNNNNNTNNTTTTTTTNTTT
TTTTTTTTTTTTNTTTTTTTNNTNNTTTTTTTTTTTTTTTTNNTTTTTTT
TTTNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTNTTNTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTTTNNNTTTTTTTTTTTTTTTTNTTTTTTTTTTN
NTTNTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNT
TTTTTTTTTTTTTTTNTTTNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTNTTTNTNTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTNTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_d14.b1 MSMg01no425_d14.b1 CHROMAT_FILE:
MSMg01no425_d14.b1 PHD_FILE: MSMg01no425_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:23 2005
         (520 letters)



>mm_chr1_41280244_41281163
          Length = 920

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 205 tgtaccacatttttaatagggttatttggttctctggagtctaacttcttaagttctttg 264
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tgtaccgcatttttaatagggttatttggttctctggagtctaacttcttaagttctttg 861

                                                                       
Query: 265 tatatattggatactagtcctctattgaatgtagggttggtaaaaatcttttccctaact 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tatatattggatactagtcctctattgaatgtagggttggtaaaaatcttttccctaact 801

                                                                       
Query: 325 gttggttgccattttgtcctactggcagtgtcatttgccttacagaaactttgtaaaact 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gttggttgccattttgtcctactggcagtgtcatttgccttacagaaactttgtaaaact 741

                                                                       
Query: 385 atttttatgacatatcaatagttatggtagatgaatatgatcagtgctgcttcactgagt 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atttttatgacatatcaatagttatggtagatgaatatgatcagtgctgcttcactgagt 681

                                                                       
Query: 445 aaggcagcctttgaagagttttctacaatcgtacaaatttagggaaggactgtcacctgt 504
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 aaggcagcctttgaagagttttctacaatcgcacaaatttagggaaggactgtcacctgt 621

                        
Query: 505 acaatttcttttc 517
           |||||||||||||
Sbjct: 620 acaatttcttttc 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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