BAC Information

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BAC

Clone NameMSMg01-425E23
Chromosome1 (Build37)
Map Location 73,313,270 - 73,474,668
singlet/doubletdoublet
Overlap genePinc
Upstream genePecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream geneLOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425E23.T7 (MSMg01no425_e23.b1)MSMg01-425E23.TJ (MSMg01no425_e23.g1)
ACCAG519023AG519024
length753771
length of high quality
(start - end)		560 (34 - 593)443 (64 - 506)
definitionCHROMAT_FILE: MSMg01no425_e23.b1 PHD_FILE: MSMg01no425_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:29 2005CHROMAT_FILE: MSMg01no425_e23.g1 PHD_FILE: MSMg01no425_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,474,341 - 73,474,668)(73,313,270 - 73,313,712)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAATT
GCTGCTGAGAGTCTAAGTCAGTGTAGTTCTGTTTGAAAAGAGTCAGCCAT
TCCTTCTAAACACGAACATCTGCATGCCGAAAGATGCCCAGTCATTTTAC
TTGTATGTGTATATTCCAAATAAATCCCTTGTTAAGTGTTCCAGGAGGCA
TTTCACAATGTTCACAGCAGGATTGCTAACAGAAGCAAGGAATGGGAAGA
ACTTAAGTTTTTGTTGATAGAAACACATATTCATTTGTTCAATTTTTGCT
CGGCGAAACAGTCTGAATGGAAATGATTGATCTGTGGTTAGAAAAAGCAG
CAAAACTCAATTTCCAAACACAATGCAGTGTGGAAAAAGCAATTGCAGAA
AGCATTGTGATGTGTAATGCCATTTTTATACACTTCAGAAGTTAGCAAAG
TCATATATATTTTTTTTGGTGGTGTGATAAAGTTATCAAGAAAACCATTT
TTCATGTAGTCCAGGAGTTAGCAAAGGCACACAACTTTCTTGACTGGCGA
TAAAGTTATCAAAAAATGGGAAAGAAATTATAGCAAGTGACAAGTGGCCT
CTGGGAGACAGAAAATAGGTAGAAATATCACATGGATAGATAGGACAGCG
CAGGTTTTAAATTGCAACATGGAGTCCCTTTACAACTGAGATTTGCAGAT
AAAAACTTTCCTTGGAATAAACCACTTCTGTAAATATGGTTTTAAGAAAT
GAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTACAACATTCTCACAAGGTGGGTTATCATTGTTTTA
TAGATGGAGAAACAGATACACAAAAAATACAAGAGACTTGTAAAAATGAT
AAATCTGAGCAAAGACAACTGGTAATACTTAAAATCACAGGGCTCTGAGG
GTATGGATTGGGTTCACAGGTACCCTTAGCATAGACTGCCCATCAGGCTC
AATCTATTTCTAAAGCAGTGTTTCTCTGTGTACATCATGCTCACAGTATT
TAGTTGTATATTATTTCCAAATGGAAATGGAGTTCATTGATCATTTAAGT
ATTATGTTCACTGTGAAACAGTTCAACACTGTTAAAAAGTAAAACTGTTC
CAAATGGTTTCAGAACCTCTAGATAATCACTGCTATTGCTGTGGTGGGTA
TCACATGAAGATTTTTTTTCTATGCATAAGCATGCATGAATATCCATGCT
TTCATTAAGTGGAGNATTGCTATATGTATTTTATTTCCTTTTAAAAAATG
ATCTGTTAGTCAACTTCGCACATCTAGAAATATCTAGGCCCCTAATTCCA
TTTAGGGAATTACCATATCCGGTTTCCCCTGGGGATGGCTGTGGAAGAAT
TTCTTTGACCTGGATGGAGGGAAAAAACCTTTCCTTTTTGTGGGAAAATT
CCCTAACTGGGCCTGGGTTTATAAAAAAAAAAGAAAATTCCCNAAACTCG
CGTTGGCCCTGGGATTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_e23.b1 MSMg01no425_e23.b1 CHROMAT_FILE:
MSMg01no425_e23.b1 PHD_FILE: MSMg01no425_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:29 2005
         (560 letters)



>mm_chr1_73473709_73474668
          Length = 960

 Score =  634 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Minus

                                                                       
Query: 233 gatagaaacacatattcatttgttcaatttttgctcggcgaaacagtctgaatggaaatg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 gatagaaacacatattcatttgttcaatttttgctcggcgaaacagtctgaatggaaatg 901

                                                                       
Query: 293 attgatctgtggttagaaaaagcagcaaaactcaatttccaaacacaatgcagtgtggaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 attgatctgtggttagaaaaagcagcaaaactcaatttccaaacacaatgcagtgtggaa 841

                                                                       
Query: 353 aaagcaattgcagaaagcattgtgatgtgtaatgccatttttatacacttcagaagttag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aaagcaattgcagaaagcattgtgatgtgtaatgccatttttatacacttcagaagttag 781

                                                                       
Query: 413 caaagtcatatatattttttttggtggtgtgataaagttatcaagaaaaccatttttcat 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 caaagtcatatatattttttttggtggtgtgataaagttatcaagaaaaccatttttcat 721

                                                                       
Query: 473 gtagtccaggagttagcaaaggcacacaactttcttgactggcgataaagttatcaaaaa 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gtagtccaggagttagcaaaggcacacaactttcttgactggcgataaagttatcaaaaa 661

                                       
Query: 533 atgggaaagaaattatagcaagtgacaa 560
           ||||||||||||||||||||||||||||
Sbjct: 660 atgggaaagaaattatagcaagtgacaa 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_e23.g1 MSMg01no425_e23.g1 CHROMAT_FILE:
MSMg01no425_e23.g1 PHD_FILE: MSMg01no425_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:29 2005
         (443 letters)



>mm_chr1_73313070_73313912
          Length = 843

 Score =  833 bits (431), Expect = 0.0
 Identities = 440/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacaacattctcacaaggtgggttatcattgttttatagatggagaaacagatacacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacaacattctcacaaggtgggttatcattgttttatagatggagaaacagatacacaa 260

                                                                       
Query: 61  aaaatacaagagacttgtaaaaatgataaatctgagcaaagacaactggtaatacttaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aaaatacaagagacttgtaaaaatgataaatctgagcaaagacaactggtaatatttaaa 320

                                                                       
Query: 121 atcacagggctctgagggtatggattgggttcacaggtacccttagcatagactgcccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacagggctctgagggtatggattgggttcacaggtacccttagcatagactgcccat 380

                                                                       
Query: 181 caggctcaatctatttctaaagcagtgtttctctgtgtacatcatgctcacagtatttag 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggctgaatctatttctaaagcagtgtttctctgtgtacatcatgctcacagtatttag 440

                                                                       
Query: 241 ttgtatattatttccaaatggaaatggagttcattgatcatttaagtattatgttcactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtatattatttccaaatggaaatggagttcattgatcatttaagtattatgttcactg 500

                                                                       
Query: 301 tgaaacagttcaacactgttaaaaagtaaaactgttccaaatggtttcagaacctctaga 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaacagttcaacactgttgaaaagtaaaactgttccaaatggtttcagaacctctaga 560

                                                                       
Query: 361 taatcactgctattgctgtggtgggtatcacatgaagattttttttctatgcataagcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatcactgctattgctgtggtgggtatcacatgaagattttttttctatgcataagcat 620

                                  
Query: 421 gcatgaatatccatgctttcatt 443
           |||||||||||||||||||||||
Sbjct: 621 gcatgaatatccatgctttcatt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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