Query= MSMg01no425_g08.b1 MSMg01no425_g08.b1 CHROMAT_FILE:
MSMg01no425_g08.b1 PHD_FILE: MSMg01no425_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:36 2005
(607 letters)
>mm_chr1_10295776_10296782
Length = 1007
Score = 1000 bits (517), Expect = 0.0
Identities = 557/577 (96%), Gaps = 11/577 (1%)
Strand = Plus / Minus
Query: 42 gcagataagtgtgcatactctgggaaaatacattaacaagaccaaatgattggtataaga 101
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1007 gcagataagtgtgcatactctgggaaaatacattagcaagaccaaatgattggtataaga 948
Query: 102 atcagttactgctttgctctgactattttcatcaaatgctggatgatgaaaattcaatca 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 atcagttactgctttgctctgactattttcatcaaatgctggatgatgaaaattcaatca 888
Query: 162 atgtatatgcaaaccatgaatacagggtcacatggaggagactgggattggataagagag 221
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 887 atgtatatgcaaaccatgaatacagggtcacatggagaagactgggattggataagagag 828
Query: 222 gggtcctag-----------aggctttataagaagtctgagtcagcaggcttgctatctc 270
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gggtcctagggtggctttaaaggctttataagaagtctgagtcagcaggcttgctatctc 768
Query: 271 atcattttatggcctctagcatgttgtgatacaacaaaaaggcctcctccacacaccaat 330
|||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 767 atcacgtgatggcctctagcatgttgtgatgcaacaaaaaggcctcctccacacaccaat 708
Query: 331 gctactctcatggatttctcaggtggactgtggtctcaacaagccttgtcaaccacccag 390
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gctactctcatggatgtctcaggtggactgtggtctcaacaagccttgtcaaccacccag 648
Query: 391 acggttgcattataacaacagataacatgaagtcactaactgaatttccattatagccac 450
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 647 acagttgcattataacaacagataacatgaagtcactaactgaatttccattatagctac 588
Query: 451 acttcacaggcatgaatggctgctatcctggttagaactcttcagtaatctgaagctgtt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acttcacaggcatgaatggctgctatcctggttagaactcttcagtaatctgaagctgtt 528
Query: 511 ttcagtacactaaggaatactatctgatgtctgctaaatacaagttaggttcttagatgc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttcagtacactaaggaatactatctgatgtctgctaaatacaagttaggttcttagatgc 468
Query: 571 atttatatgtatctatatgtccttagaaatatttgcc 607
|||||||||||||||||||||||||||||||||||||
Sbjct: 467 atttatatgtatctatatgtccttagaaatatttgcc 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_g08.g1 MSMg01no425_g08.g1 CHROMAT_FILE:
MSMg01no425_g08.g1 PHD_FILE: MSMg01no425_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:36 2005
(506 letters)
>mm_chr1_10144069_10144974
Length = 906
Score = 948 bits (490), Expect = 0.0
Identities = 502/506 (99%)
Strand = Plus / Plus
Query: 1 tttcatgtccaacgtgcttcacttcagacatgagcatgtactgaatgaaaacctgaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatgtccaacgtgcttcacttcagacatgagcatgtactgaatgaaaacctgaagac 260
Query: 61 tgttctaactttatgctaaaggtattctcttacctctgtctgctgttctggcaatttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttctaactttatgctaaaggtattctcttacctctgtctgctgttctggcaatttcat 320
Query: 121 gttgtcaaagattctgaaaacaattctgaataagtcctgccaccagtgtttttcataagt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gttgtcaaagattctgaaaacaattctgaataagtcctgccaccaatgtttttcataagt 380
Query: 181 gtggccatatgttttcattatttcaaacattactgttaagcccctaaaataacagaacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggccatatgttttcattatttcaaacattactgttaagcccctaaaataacagaacac 440
Query: 241 aattaggatatctgtaacgtaaagaagcaaaacttcctaagaaagggttaaaagtttaca 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaggaaagctgtaacgtaaagaagcaaaacttcctaagaaagggttaaaagtttaca 500
Query: 301 aagctacgaaaaaatcaaagttaatacttgttaaagttaacactggctgttaatgcatat 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttacgaaaaaatcaaagttaatacttgttaaagttaacactggctgttaatgcatat 560
Query: 361 tgaatatgatgtaattcaagctgtaaagttacaggttcctttaggacacaaggttcagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatatgatgtaattcaagctgtaaagttacaggttcctttaggacacaaggttcagaa 620
Query: 421 aataaaaactgcaaaagctctgacctgaaaatcatttatttttcctttcccactcctact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataaaaactgcaaaagctctgacctgaaaatcatttatttttcctttcccactcctact 680
Query: 481 agtctagctattaaaactgtaaatgg 506
||||||||||||||||||||||||||
Sbjct: 681 agtctagctattaaaactgtaaatgg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
