BAC Information

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BAC

Clone NameMSMg01-425G16
Chromosome1 (Build37)
Map Location 77,159,731 - 77,358,636
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps
Downstream geneEpha4, LOC100039330, Pax3, LOC100039210, Sgpp2, LOC100039382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425G16.T7 (MSMg01no425_g16.b1)MSMg01-425G16.TJ (MSMg01no425_g16.g1)
ACCAG519104AG519105
length768765
length of high quality
(start - end)		525 (32 - 556)496 (63 - 558)
definitionCHROMAT_FILE: MSMg01no425_g16.b1 PHD_FILE: MSMg01no425_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:37 2005CHROMAT_FILE: MSMg01no425_g16.g1 PHD_FILE: MSMg01no425_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,358,117 - 77,358,636)(77,159,731 - 77,160,226)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTTCCTAGG
CATTCCCAAGAACCCAATGAATTTTGACAATGGAAAAACTGTACCACCCA
CTTAAATCAACAACCCAATTAAGGCCCATTGCTGAGTGGGGAGGAGGGGG
GCTGAGGCCTCAGTTATTTTACCCTTTCCCTCTGGAGGAAGTGCCCCTAG
CCACTGACAGCTCCCAGTTGAATAGGTAATAGACCACTGACATATCTGAT
TTCTGGCAATCACCCTGGATATGTTTTTTTGTTTATAGCACTGCTGGAGA
AAACTTGATGAATACTTGGGAGAAAATAGAATTAGGACCTAAGAACGCTG
CTGAAATCAACTTAGCAGAAGACAGACACAGCTTTGTGTAGGGCTGGAAA
AGATAGCTGTACAAGAAAGTGGCTTAAATGTAGACCCAGAGAAACTATCT
ATTACACACATAATATGTAAGATGCAATTAATGCCTACTGTACTAATCTG
CAGAGTCTCACTACCTAGTAATCAGATTGGCATATCCTAATGAGACCCAT
GTTGTTTGCAATCAGACTGGCATTGCTCATTCATATCTCTATTCCATAAG
ATGCACTTTTAAATGGCTCAGATTGCACCAGATGCTATAAGAAATGGTTT
TCCATTTTATTCTATTACCAGCATTTTTCCTTCTCCCCATTAGCATATTT
AAAATCACCCCCAGGCAAATGTGGAGGGGCTGAAAATTTGCACGGAAATT
GAANTAAAATTTTGTTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCTACCCTTACCTCCCAAGTTCTGGAATGGCAGCTA
AGCACCACACAGGGCTTCATTAAAACCTTAGAGAAAGGTAAACACCAAAA
ACCTGTTTTCCTTATTGACACTGAAATTTCTTTCCATTTCAAGTGGACCA
TTTATTACAATAGTACTATTTAAAATAACAACTGAATTTGGTATTTCAAG
GACACCCAGTCAGCATTTTCTATAAAAGATTTGTGCACCATTCCTTTATG
AACGTTCACATTTTCTTCCAGAGACTCTGAGTAACATTCTCCAGCATGAC
TCAGCTGCTGTCTAAAGAAAGACCTCATCAATAAAACCTGTGCTAAGAAA
TCTAGTCCCTAACCACGGGGGGTTTCAAGGTAGAGCTCTCTGACACAGTA
CGACTAATAGAGATTCCCGGAGAATGCATCCTCTGATGATAGGAACATTC
TTTTGCTCTTTCAAAAGGTCATAAGGAACTAGATTAAAGCAACTTATAAT
CCTCACTAGGGATGCCAAGGACTTAATGAACTTTCTNGCTCCTCTAATCC
TGGCTTATGGTGTAAATATGTTTGGCTATTGCCCCCTTGGCCATGAACCA
TGGGCCTTCTTANAGACCACTTGAGAAACCCGGACTACCCCTCCCCCCCC
ATATGGGGGGGGGGGGGGTGGGGCGGTATGTGTGAATATTGAAAAAGTGG
TTCCCCACACAATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_g16.b1 MSMg01no425_g16.b1 CHROMAT_FILE:
MSMg01no425_g16.b1 PHD_FILE: MSMg01no425_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:37 2005
         (525 letters)



>mm_chr1_77357912_77358836
          Length = 925

 Score =  982 bits (508), Expect = 0.0
 Identities = 517/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttcctaggcattcccaagaacccaatgaattttgacaatggaaaaactgtacca 65
           |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattcttcccaggcattcaaaagaacccaatgaattttgacaatggaaaaactgtacca 666

                                                                       
Query: 66  cccacttaaatcaacaacccaattaaggcccattgctgagtggggaggaggggggctgag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cccacttaaatcaacaacccaattaaggcccattgctgagtggggaggaggggggctgag 606

                                                                       
Query: 126 gcctcagttattttaccctttccctctggaggaagtgcccctagccactgacagctccca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcctcagttattttaccctttccctctggaggaagtgcccctagccactgacagctccca 546

                                                                       
Query: 186 gttgaataggtaatagaccactgacatatctgatttctggcaatcaccctggatatgttt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gttgaataggtaatagaccactgacatatctgatttctggcaatcaccctggatatgttt 486

                                                                       
Query: 246 ttttgtttatagcactgctggagaaaacttgatgaatacttgggagaaaatagaattagg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttttgtttatagcactgctggagaaaacttgatgaatacttgggagaaaatagaattagg 426

                                                                       
Query: 306 acctaagaacgctgctgaaatcaacttagcagaagacagacacagctttgtgtagggctg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acctaagaacgctgctgaaatcaacttagcagaagacagacacagctttgtgtagggctg 366

                                                                       
Query: 366 gaaaagatagctgtacaagaaagtggcttaaatgtagacccagagaaactatctattaca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaaaagatagctgtacaagaaagtggcttaaatgtagacccagagaaactatctattaca 306

                                                                       
Query: 426 cacataatatgtaagatgcaattaatgcctactgtactaatctgcagagtctcactacct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cacataatatgtaagatgcaattaatgcctactgtactaatctgcagagtctcactacct 246

                                                   
Query: 486 agtaatcagattggcatatcctaatgagacccatgttgtt 525
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agtaatcagattggcatatcctaatgagacccatgttgtt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_g16.g1 MSMg01no425_g16.g1 CHROMAT_FILE:
MSMg01no425_g16.g1 PHD_FILE: MSMg01no425_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:38 2005
         (496 letters)



>mm_chr1_77159531_77160426
          Length = 896

 Score =  951 bits (492), Expect = 0.0
 Identities = 495/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctacccttacctcccaagttctggaatggcagctaagcaccacacagggcttcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctacccttacctcccaagttctggaatggcagctaagcaccacacagggcttcatta 260

                                                                       
Query: 61  aaaccttagagaaaggtaaacaccaaaaacctgttttccttattgacactgaaatttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aaaccttagagaaaggtaaacaccaaaaacctgttttccttattgccactgaaatttctt 320

                                                                       
Query: 121 tccatttcaagtggaccatttattacaatagtactatttaaaataacaactgaatttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatttcaagtggaccatttattacaatagtactatttaaaataacaactgaatttggt 380

                                                                       
Query: 181 atttcaaggacacccagtcagcattttctataaaagatttgtgcaccattcctttatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcaaggacacccagtcagcattttctataaaagatttgtgcaccattcctttatgaa 440

                                                                       
Query: 241 cgttcacattttcttccagagactctgagtaacattctccagcatgactcagctgctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgttcacattttcttccagagactctgagtaacattctccagcatgactcagctgctgtc 500

                                                                       
Query: 301 taaagaaagacctcatcaataaaacctgtgctaagaaatctagtccctaaccacgggggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagaaagacctcatcaataaaacctgtgctaagaaatctagtccctaaccacgggggg 560

                                                                       
Query: 361 tttcaaggtagagctctctgacacagtacgactaatagagattcccggagaatgcatcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcaaggtagagctctctgacacagtacgactaatagagattcccggagaatgcatcct 620

                                                                       
Query: 421 ctgatgataggaacattcttttgctctttcaaaaggtcataaggaactagattaaagcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgatgataggaacattcttttgctctttcaaaaggtcataaggaactagattaaagcaa 680

                           
Query: 481 cttataatcctcacta 496
           ||||||||||||||||
Sbjct: 681 cttataatcctcacta 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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