Query= MSMg01no425_l24.b1 MSMg01no425_l24.b1 CHROMAT_FILE:
MSMg01no425_l24.b1 PHD_FILE: MSMg01no425_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:03 2005
(492 letters)
>mm_chr1_85100646_85101540
Length = 895
Score = 640 bits (331), Expect = 0.0
Identities = 409/441 (92%), Gaps = 16/441 (3%)
Strand = Plus / Plus
Query: 63 aagaaagaaagaaagaaagaaagaaagaaagaaagaaaga-a---agaaagaaaga-a-- 115
|||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |
Sbjct: 260 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagagagggagagagagagagagc 319
Query: 116 -agaaagaaagaaagaaagaaagaaagaaaggaaggaaggaagggaaggaagaatcataa 174
||| ||| ||| ||| ||| ||| ||||||||||||||||| || |||||||||||
Sbjct: 320 gagagagagagagagagagagagagagaaaggaaggaaggaa--ga---aagaatcataa 374
Query: 175 aatgttttactaaaaccaaaagggcataaaaagaaaggaaagccaaa---aaaaagtgta 231
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 375 aatgttttactaaaaccaaaagggcataaaaagaaaggaaagccaaaaacaaaaagagta 434
Query: 232 aaattaaaatatttacaaacatggtaggtatttctctgtgtccataaagagtcaaaatgt 291
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 435 aaatgaaaatatttacaaacatggtaggtatttctctgtgtccataatgagtcaaaatgt 494
Query: 292 ggataatttaataatagcacaattataaaacagagtacgtttaaaaactgtaactaatgt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggataatttaataatagcacaattataaaacagagtacgtttaaaaactgtaactaatgt 554
Query: 352 aaataaaagagggtctgggaggatggctcagctgatacaggccttgcccccaagtctgcg 411
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 555 aaataaaagagggtctgggaggatggctcagctgatacaggccttgccaccaagtctgcg 614
Query: 412 gacatgagattgctcccctaggaactaactgcacggtagtaggagagaaccaactcccca 471
|||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct: 615 gacatgagcttgctcccctaagaactaactacatggtagtaggagagaaccaactcccca 674
Query: 472 aagttgtcctctgatctcaaa 492
|||||||||||||||||||||
Sbjct: 675 aagttgtcctctgatctcaaa 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 895
Length adjustment: 10
Effective length of query: 482
Effective length of database: 885
Effective search space: 426570
Effective search space used: 426570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_l24.g1 MSMg01no425_l24.g1 CHROMAT_FILE:
MSMg01no425_l24.g1 PHD_FILE: MSMg01no425_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:03 2005
(425 letters)
>mm_chr1_87599569_87600393
Length = 825
Score = 814 bits (421), Expect = 0.0
Identities = 424/425 (99%)
Strand = Plus / Minus
Query: 1 cttacgcttgtctggaatctccgctcatccctgtacaagcaagctgccctcttcccccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cttacgcttgtctggaatctccgctcatccctgtacaagcaagctgccctcttcccccaa 544
Query: 61 ctctacccgcacgaggaagcctccaaacaacggaaaggcgccaagagtccagttctgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctctacccgcacgaggaagcctccaaacaacggaaaggcgccaagagtccagttctgcat 484
Query: 121 tcttggcagctgtcgtaacctcctccccggatgctgccagccaccccaatccctgcctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcttggcagctgtcgtaacctcctccccggatgctgccagccaccccaatccctgcctaa 424
Query: 181 gtgctcgctcatatcttgaccatacttgggcacaagcccagcttatcacccctcacctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtgctcgctcatatcttgaccatacttgggcacaagcccagcttatcacccctcacctaa 364
Query: 241 agagctatacttgtcccccacccccaccttaacctgggcacatgacttcctcagttctca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agagctatacttgtcccccacccccaccttaacctgggcacatgacttcctcagttctcg 304
Query: 301 tcattggaactgatgagcctgcctgcctgggagcagaatctaataaacctgcgtttatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcattggaactgatgagcctgcctgcctgggagcagaatctaataaacctgcgtttatgt 244
Query: 361 gcttttaatgtggtctgatatggcctgtatatctgtgacactgacacacacacacacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcttttaatgtggtctgatatggcctgtatatctgtgacactgacacacacacacacaca 184
Query: 421 cacac 425
|||||
Sbjct: 183 cacac 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
