BAC Information

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BAC

Clone NameMSMg01-426A16
Chromosome1 (Build37)
Map Location 175,372,684 - 175,373,168
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A16.T7 (MSMg01no426_a16.b1)MSMg01-426A16.TJ (MSMg01no426_a16.g1)
ACCAG519579AG519580
length786811
length of high quality
(start - end)		488 (40 - 527)186 (69 - 254)
definitionCHROMAT_FILE: MSMg01no426_a16.b1 PHD_FILE: MSMg01no426_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:25 2005CHROMAT_FILE: MSMg01no426_a16.g1 PHD_FILE: MSMg01no426_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TATTTCCTGAGAACCTGACCCTGAGCCAGGCACTGCAGCACACGTAGTGC
ACATCTTTAATTTTAGTACCTGGAGATGTGACCCCGGTGAATCACCAGGT
CAAGGGAAGGTTGGGATACAGAGTAGAAACTGTGTTACAATAAAATTAAG
AAGGAATTGATGCGTTCAAGCGCTTTTCCCCCTAATGGATTCTTTCGAAA
CCAATTTAGCTGGAAGTAATTAATTCTATTTCTAAAGCGTTATTTAATTT
ATTATGGATCATATTTGGCATTAACGTTATTATGTATGATTCCTGGGGGT
GATGGAATGGTAAAGCACTTTAGCGAGAATTAGCAGAGTCCCTTATATTT
TAGGCTTAATCCTTGTTTTTATCAAGTCAGTATATTGCTCTGACTTAAAA
TTCAAATAGTACTGTCAACATTGGGAGAATAGCTCTTTGGGGATGGGAAT
GGTATTCAGTGACAGAGTGCTGCTGGCCTANCATGCACAATGTCCATAGT
TTAGTCCTCTTGCACTGATCAAAAAAAAAAAAAAGGTAAATAAAAGAGTA
ACTCTCTCTCTCTCCTGTGGTACTACTTCCAACCCACTCCCTAGAAGAGG
TTTTTAAACCTTTTGGTTTGGGTTTTTAGTTTGGGAAAAAAACCCTCCCT
GAAACCCCGGCGGTGTCCAAAATTCCTTGGTGTGCACCCTGAGGAAATTT
TGCCCCTTTTTTCTTTTGGGAGAGAAGTGGGGGGGG

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGATCTCTCCAGTACTTTTAACATGAAGGGA
TGTTGTATTTTGTCAAATGCTTTTTCAGCATCTAAGGAGATGATCATGTT
ACTTTTTTCTTTGAGTTTGTTTATATAGTGGATTATGTTAATGGATTTCT
GTATATTGAACCATCCCTGCNTCCCTGGNATGAAACCTACTTGATCATGG
TGAATGATGGTTTTGCTCTTCGATTTGGTTCGCGCGAATTTTATTGAGTA
TTTTTGTATCGATATTCTTTTTTTTTTTTGCTCTGATGCTTTCTTTTATG
CTTGTTTCCTTGTTTGTTTTCCGTGCCTGTGTTGTTCCCGTCTTTCGCTT
TTCTGTCCCCCCCCCCCCCTTTCCCTTTTTTCTTTTTCTTTTTTTGTCTT
CTTCCTTTCTTCCCTTCGTCTTCTTTCCTTTTCCTTTCCCTCCTCTCCAC
TCTTCTCTTCTTTTCCTCCTCTTTCTTCTTTTCCTCTTCTCCCTTCTTTC
CTTTTTCCCCCCCTCTTCTCCCTTCCCCTTCTTTCCCCTCTTCTTTCTTC
TTTTTTCCTTTACTCTTCTTCTTTTTTTAGTCCCTTCCCCTTTTCTTTCC
TCTTTCTCTCCCTCCTCTCTCTCTTCTTCTTTTCTCCTCTTTTTCTCCTT
TTCTCTTCACTTTTCACCCCCTCTCCTTTTTTCCCTTGTTCTCCTTGTCC
CTTCTACTTTCCTTTCCCTCTCTCCCTATTTTCCTACCCCGTCTTTTCCC
TTTTCCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a16.b1 MSMg01no426_a16.b1 CHROMAT_FILE:
MSMg01no426_a16.b1 PHD_FILE: MSMg01no426_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:25 2005
         (488 letters)



>mm_chr1_175372481_175373368
          Length = 888

 Score =  938 bits (485), Expect = 0.0
 Identities = 485/485 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatttcctgagaacctgaccctgagccaggcactgcagcacacgtagtgcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctatttcctgagaacctgaccctgagccaggcactgcagcacacgtagtgcac 263

                                                                       
Query: 64  atctttaattttagtacctggagatgtgaccccggtgaatcaccaggtcaagggaaggtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctttaattttagtacctggagatgtgaccccggtgaatcaccaggtcaagggaaggtt 323

                                                                       
Query: 124 gggatacagagtagaaactgtgttacaataaaattaagaaggaattgatgcgttcaagcg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggatacagagtagaaactgtgttacaataaaattaagaaggaattgatgcgttcaagcg 383

                                                                       
Query: 184 cttttccccctaatggattctttcgaaaccaatttagctggaagtaattaattctatttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttttccccctaatggattctttcgaaaccaatttagctggaagtaattaattctatttc 443

                                                                       
Query: 244 taaagcgttatttaatttattatggatcatatttggcattaacgttattatgtatgattc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaagcgttatttaatttattatggatcatatttggcattaacgttattatgtatgattc 503

                                                                       
Query: 304 ctgggggtgatggaatggtaaagcactttagcgagaattagcagagtcccttatatttta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgggggtgatggaatggtaaagcactttagcgagaattagcagagtcccttatatttta 563

                                                                       
Query: 364 ggcttaatccttgtttttatcaagtcagtatattgctctgacttaaaattcaaatagtac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcttaatccttgtttttatcaagtcagtatattgctctgacttaaaattcaaatagtac 623

                                                                       
Query: 424 tgtcaacattgggagaatagctctttggggatgggaatggtattcagtgacagagtgctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtcaacattgggagaatagctctttggggatgggaatggtattcagtgacagagtgctg 683

                
Query: 484 ctggc 488
           |||||
Sbjct: 684 ctggc 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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