XXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGAATCCGCGGAATTCTAC
TGTTTTTCCTTCAGTTGCAGCCAGCATGGCATCCCTTTGAGGTTTGAATA
CAGAGGAGGGACCTGGGAGGCTTGGTGTTATTTGATTTTCAGGGGGAGCT
ATAGAAGGTGATGGATTTTTTCTCTCTGGCGTTACTTGGACTCTAGGATT
CTGAGCCTTATGGGTCCGTGACTGCGATTTGGGCATCTGCAGGCGCATTC
TCGGGGCGGCTACTCGGCAGCGGGCGGCTGGTGGCCATGGGGGACACATC
CGGGTATGGCAAATATTTTTATTATAGCGCAGAGCCTTGTATGTTCAGGG
CCAAGTATAATTATTCCTTTAGAAACCGGACCGTGCTTCCTTGCGTGACT
TGACAAACGCGCCTGGGGGCGTAAAGCCAGCTAGGCGACCTTGCTTTAAT
TCAATCAATAGTTTGATGATCCTCTTTTTTCTCCTTGTACTTCGCTATTG
TCCCTCTATTTTTTTTTGTTTGAGTAGCTACCTTACAGTATCTTCCTTTT
CGTCTAATGGATTTTCTTCTTTATTTCTTCCTTCCCTGTCTTCCCCGGAT
CTGATTCTTCTTCTGTGTTCTCTTTTCTCTCGGTTACTTTTTCTTGTATC
TTTTTTAGTTTACATCATTTTCCCTTTTCCCCGGGTCCTTATTCTTTTTT
CTCTTTCTCCTCCTGCTTTGACAGCTGTTTTTTTTTTTCTTTCCTTTTTT
TATCCTCTATTTTCCTACTCTCCTTCTTTTCCTGCTCCCTCCACTTTTCT
TTCTTTTATATTATTTCCGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTCTGACTCTCTTAGAAGATTAGGTCCCT
CTTCTGAGGTTTCGAAGCACTTGAGTTGAGAGGCACCCACTACATTGATG
CTTTCCCTCTTCTCTCCATCCCCTTCCCTGGAAGACTGTATAGTTGTGGA
AATTGCAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAATT
TTCTATTTGCTTTAAGATAGAACCTCACTATGTAGCCCATGCTGGCCTGG
AACTCTCAAGGTGAAAATCAAGCTAGCCTAGAACTCACCTGCATCTGCCC
ACTCTTCCCTTCCCCTACCTCCCAGGGCTGAAGCTACAGGTGTGCGCTGT
CATGCATGGCTTGAGTTACAGGTGTGCACTGTCATACATGGCTGAGGTTG
CAGGTGTGCTGTCATGCATGGCTTGAGTTACAGGTGTGCACTGTCATGCA
TGGCTGAGGTGGGGACTAGCTGTCTACTCAGAGGTCAGAGAATTGGGGAA
TCCTCTCAGCTCAATGTCCAGGGCCTATGAGAAGAAGAAGGCAGTGGCTG
CTGTCTGTAAAGGAAGGACCTGTGTCATCTATGCATCTCTCTCTTTATCC
ATTCCTTAAGTGATGGGCACCCTAGGGTGAGGGTGCTGGTTGCTCTGTCC
CAGTAAGGCGCTCTGAAACATATCCCTAGTATGCTCCTTAGAGGGATTCA
TACTTCTCTCCTTCTTAG

Query= MSMg01no426_g01.g1 MSMg01no426_g01.g1 CHROMAT_FILE:
MSMg01no426_g01.g1 PHD_FILE: MSMg01no426_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:53 2005
         (512 letters)



>mm_chr1_87442678_87443589
          Length = 912

 Score =  913 bits (472), Expect = 0.0
 Identities = 501/512 (97%), Gaps = 4/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctgactctcttagaagattaggtccctcttctgaggtttcgaagcacttgagttga 60
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 201 tcttctgactctcttagaagattaggtccctctgctgaggtttcaaagcacttgagttga 260

                                                                       
Query: 61  gaggcacccactacattgatgctttccctcttctctccatccccttccctggaagactgt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gaggcacccactacattgatgctttccctcttctctccaaccccttccctggaagactgt 320

                                                                       
Query: 121 atagttgtggaaattgcaattaattaattaattaattaattaattaattaattaattaat 180
           |||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagttgtggaaattg-aa---attaattaattaattaattaattaattaattaattaat 376

                                                                       
Query: 181 tttctatttgctttaagatagaacctcactatgtagcccatgctggcctggaactctcaa 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttctatttgctttgagatagaacctcactatgtagcccatgctggcctggaactctcaa 436

                                                                       
Query: 241 ggtgaaaatcaagctagcctagaactcacctgcatctgcccactcttcccttcccctacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggtgaaaatcaagctagcctagaactcacctgcatctgcccactcttcccttcccctacc 496

                                                                       
Query: 301 tcccagggctgaagctacaggtgtgcgctgtcatgcatggcttgagttacaggtgtgcac 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 497 tcccagggctgaagctacaggtgtgcactgtcatgcatggcttgagttacaggtgtgcac 556

                                                                       
Query: 361 tgtcatacatggctgaggttgcaggtgtgctgtcatgcatggcttgagttacaggtgtgc 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 tgtcatacatggctgaggttgcaggtgtgatgtcatgcatggcttgagttacaggtgtgc 616

                                                                       
Query: 421 actgtcatgcatggctgaggtggggactagctgtctactcagaggtcagagaattgggga 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 617 actgtcatgcatggctgaggtggggactagctgtctgctcagaggtcagagaattgggga 676

                                           
Query: 481 atcctctcagctcaatgtccagggcctatgag 512
           ||||||||||||||||||||||||||||||||
Sbjct: 677 atcctctcagctcaatgtccagggcctatgag 708



 Score = 80.0 bits (41), Expect = 4e-19
 Identities = 45/47 (95%), Gaps = 2/47 (4%)
 Strand = Plus / Minus

                                                          
Query: 138 aattaattaattaattaattaattaattaattaattaatt--aattt 182
           ||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 377 aattaattaattaattaattaattaattaattaattaatttcaattt 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 5
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)