Query= MSMg01no427_a20.b1 MSMg01no427_a20.b1 CHROMAT_FILE:
MSMg01no427_a20.b1 PHD_FILE: MSMg01no427_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:48 2005
(651 letters)
>mm_chr1_180085773_180086823
Length = 1051
Score = 1207 bits (624), Expect = 0.0
Identities = 640/647 (98%), Gaps = 3/647 (0%)
Strand = Plus / Plus
Query: 1 tgacccagaaaatattttggattttctttttccaggagggagtctctctccatagccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacccagaaaatattttggattttctttttccaggagggagtctctctccatagccctt 260
Query: 61 ggtatcttagaactcattatatagactgggctgacttcaaacttatatagctacccctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtatcttagaactcattatatagactgggctgacttcaaacttatatagctacccctgc 320
Query: 121 ctcccaagtgctgggattaaagtgtgtaccaccacaccctccatagtgtacatttccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcccaagtgctgggattaaagtgtgtaccaccacaccctccatagtgtacatttccaag 380
Query: 181 ttggtttactgaaaatccatgaaccttttgtcactcctcactcacatgtacacccacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtttactgaaaatccatgaaccttttgtcactcctcactcacatgtacacccacagg 440
Query: 241 gctggatctctgccctgctactatgactatatccatagcaaactgaaacatgggcaccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggatctctgccctgctactatgactatatccatagcaaactgaaacatgggcaccat 500
Query: 301 tctcagctgtaatcccttctgaaaactaaactgagctcctgcacccacatatcttggact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcagctgtaatcccttctgaaaactaaactgagctcctgcacccacatatcttggact 560
Query: 361 aagtgagggatcccccagaaggtcctctctgaaccacgggtgagggctggtaggggattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtgagggatcccccagaaggtcctctctgaaccacgggtgagggctggtaggggattt 620
Query: 421 gccaggcattctctgctactgcagctgcaagtagaaaggtgtagccatccatctcttaag 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 gccaggcattctctgctactgcagctgcaagtagaaaggtgtaaccatccatctcttaag 680
Query: 481 gatgtttccaaaatgaatgtatgagaatctggggctgttgagaatggttagcggatagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatgtttccaaaatgaatgtatgagaatctggggctgttgagaatggttagcggatagga 740
Query: 541 gcactggctgctcttaacagaggacctggtttttgctcccagcatccacaagacagctca 600
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acac---cagctcttaacagaggacctggtttttgctcccagcatccacaagacagctca 797
Query: 601 naagcacctgttaatgtcagttcgtgggggttctgatgcccttttct 647
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaagcacctgttaatgtcagttcgtgggggttctgatgcccttttct 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_a20.g1 MSMg01no427_a20.g1 CHROMAT_FILE:
MSMg01no427_a20.g1 PHD_FILE: MSMg01no427_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:48 2005
(500 letters)
>mm_chr1_180260512_180261412
Length = 901
Score = 946 bits (489), Expect = 0.0
Identities = 498/501 (99%), Gaps = 1/501 (0%)
Strand = Plus / Minus
Query: 1 actttatttttactgtcttaagtac-gtttggggatttatacctagaaaatatcttcaca 59
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 701 actttatttttactgtcttaagtacggtttggggatttatacctagaaaatatcttcaca 642
Query: 60 cttagagattatattaatctgctaaatagaaacttgtatggttattatacaaagaatgtg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cttagagattatattaatctgctaaatagaaacttgtatggttattatacaaagaatgtg 582
Query: 120 atgaaggccatgaccagataactgaaagttgaaagaattaaacacattcagagataaagt 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atgaaggccgtgaccagataactgaaagttgaaagaattaaacacattcagagataaagt 522
Query: 180 ttatagaatttacatgttcataattgatttataagtttgacttgattccctgtaggaaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttatagaatttacatgttcataattgatttataagtttgacttgattccctgtaggaaac 462
Query: 240 ttcacccttccagaggttgcagaatgctttgatgaaataacctatgttgaacttcagaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttcacccttccagaggttgcagaatgctttgatgaaataacctatgttgaacttcagaaa 402
Query: 300 gaggaagcccaaaagcttttggagcaatataaagaagaaagcaaaaaggcactgccacca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaggaagcccaaaagcttttggagcaatataaagaagaaagcaaaaaggcactgccacca 342
Query: 360 gagaagaagcaaaacactggctcaaagaaaagcaataagaataagagtggcaagaaccag 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaaaagaagcaaaacactggctcaaagaaaagcaataagaataagagtggcaagaaccag 282
Query: 420 ttcaacagaggtggtggccatagaggccgtggaggattcaatatgcgaggtggcaatttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttcaacagaggtggtggccatagaggccgtggaggattcaatatgcgaggtggcaatttc 222
Query: 480 agaggaggaggcaagttaatt 500
|||||||||||||||||||||
Sbjct: 221 agaggaggaggcaagttaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space: 436590
Effective search space used: 436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
