Query= MSMg01no427_j22.b1 MSMg01no427_j22.b1 CHROMAT_FILE:
MSMg01no427_j22.b1 PHD_FILE: MSMg01no427_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:32 2005
(522 letters)
>mm_chr1_192409350_192410271
Length = 922
Score = 870 bits (450), Expect = 0.0
Identities = 501/518 (96%)
Strand = Plus / Minus
Query: 5 gaattccctcctgccttctattgtgaaactgcatctcattttaggattatggttgtcttt 64
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 722 gaattccctcctgtcttctattgtgaagctgcatctcattttaggattatggttgtcttt 663
Query: 65 ctccaagtcctccatggttgtccgtctgtccatggtgccaggcagtggaagtcctgactg 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctccaagtcctctatggttgtccgtctgtccatggtgccaggcagtggaagtcctgactg 603
Query: 125 ccatctgacgaccgtctctgggtatttgcggaaggtgtggcacctgtgaagctccctttt 184
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct: 602 ccgtctgacgaccgtctctgggtatttgcagaaggtgtggcacctgtcaagctccttttt 543
Query: 185 caggtcagcagcttgaagctcagcctccaagctgccccctaagcgcccagatgtttttca 244
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 542 caggtcagcagctcaaagctcagcctccaagctgccccctaagtgcccagatgtttttca 483
Query: 245 tcagctgtcgcttcttctgggcttattgatgcattctcagtgtttaagaactgtgataga 304
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 482 tcagctgtcacttcttctgggcttattgatgcattctcagtgtttaagaactgggataga 423
Query: 305 acatctgggttgttaatggagactggggatgggccggtcaccatggagaggccaagggtg 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 422 acatctgggttgttaatggagactggggatgggccggtcaccacagagaggccaggggtg 363
Query: 365 tcttctgctcttgtctctggcatctcagtcctttccagccacacagttggcttcttcctg 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 362 tcttctgctcttgtctctggcatctcagtcttttccagccacacagttggcttcttcctg 303
Query: 425 ggtcccaggcctctctgtgtaatctggttttccccctgtgtcccagccttcccaggcact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggtcccaggcctctctgtgtaatctggttttccccctgtgtcccagccttcccaggcact 243
Query: 485 ggctccagccgtcctttctcttttccaggtgagggtgc 522
||||| ||||||||||||||||||||||||||||||||
Sbjct: 242 ggctcgagccgtcctttctcttttccaggtgagggtgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_j22.g1 MSMg01no427_j22.g1 CHROMAT_FILE:
MSMg01no427_j22.g1 PHD_FILE: MSMg01no427_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:32 2005
(488 letters)
>mm_chr1_192234033_192234920
Length = 888
Score = 915 bits (473), Expect = 0.0
Identities = 485/489 (99%), Gaps = 1/489 (0%)
Strand = Plus / Plus
Query: 1 caggccagtaagagaccctgtctcagaaagacac-agatggatgacatctgaggaacaat 59
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 200 caggccagtaagagaccctgtctcagaaagacacaagatggatgacatttgaggaacaat 259
Query: 60 agccaagactgttctctagcctctatgtgcacatggacacacatgcacctgctgacatga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agccaagactgttctctagcctctatgtgcacatggacacacatgcacctgctgacatga 319
Query: 120 gtacccctgtacaaatctgagtgcacacggacgcacacacgtgcacacacacatgcctat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtacccctgtacaaatctgagtgcacacggacgcacacacgtgcacacacacatgcctat 379
Query: 180 atacacacatacatacatgcacacatatacacacatgctggtgcacacacatatacacat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atacacacatacatacatgcacacatatacacacatgctggtgcacacacatatacacat 439
Query: 240 gaacacatatacacacacatgcctatatacacacatatatacatgaacacacatgactgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaacacatatacacacacatgcctatatacacacatatatacatgaacacacatgactgt 499
Query: 300 acacacacatgactgtacatacacatgactgaacacacatatgcctgtgcacacacagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acacacacatgactgtacatacacatgactgaacacacatatgcctgtgcacacacagaa 559
Query: 360 agattaaatgaggccataaaaataaattcctaaccctatgagactggctgtataagtaaa 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 agattaaatgaggccataaaaataaattcctaaccctatgagaccggctgtataagtaaa 619
Query: 420 ggaagcaagaagtaagctaggaggctctgctaagtgtctctgctatctttaggaccccac 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggaagcaagaagtaagctagaaggctctgctaagtgtctctgctatctttaggaccccac 679
Query: 480 ggagttcaa 488
|||||||||
Sbjct: 680 ggagttcaa 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
