Query= MSMg01no427_l13.b1 MSMg01no427_l13.b1 CHROMAT_FILE:
MSMg01no427_l13.b1 PHD_FILE: MSMg01no427_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:40 2005
(534 letters)
>mm_chr1_88914885_88915818
Length = 934
Score = 971 bits (502), Expect = 0.0
Identities = 523/530 (98%)
Strand = Plus / Minus
Query: 5 gaattcctatcccttacaggaaagaggggatctttagtgcaagccggcttgaaagactcg 64
||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 734 gaattcctatcccagagaggaaagaggggatctctagtgcaagccggcttgaaagactcg 675
Query: 65 ccatactagtgagccctggacgtgatgggagactgtgcctcagagagaaacgtggaaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccatactagtgagccctggacgtgatgggagactgtgcctcagagagaaacgtggaaaag 615
Query: 125 cagctgagggtgactgccaagcctctgcatgcacacacccaccaaacatgcaccacacat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cagctgagggtgactgccaagcctctgcatgcacacacccaccaaacatgcaccacacat 555
Query: 185 gtataagcacaggaaaatgaaataagaaacaagaattaaaaaattgtcatttgaaaattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtataagcacaggaaaatgaaataagaaacaagaattaaaaaattgtcatttgaaaattt 495
Query: 245 gacatttgttatgtgaaataagttggacctagactgacttatatattctgtctcatgcat 304
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 494 gacatttgttatgtgaaataagttggacctagactgacaaatatattctgtctcatgcat 435
Query: 305 ggaatctagatgaaaaagagagaggagaggagaggcactattttggaagggccaggggag 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 434 ggaatctagatgaaaaagagagaggagaggagaggaactattttggaagggccaggggag 375
Query: 365 tgggaacaagacacagtgatgggcatgaccatcgaagtataagtacacgtgtatagaaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgggaacaagacacagtgatgggcatgaccatcgaagtataagtacacgtgtatagaaag 315
Query: 425 ggcaacgcaaatccattatttggtataattagtacataagtagataggtgtggttgtaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggcaacgcaaatccattatttggtataattagtacataagtagataggtgtggttgtaca 255
Query: 485 tgtgtttggttctagcatttaggatgctgaggcagaaggtttaaagttca 534
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgtgtttggttctagcatttaggatgctgaggcagaaggtttaaagttca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_l13.g1 MSMg01no427_l13.g1 CHROMAT_FILE:
MSMg01no427_l13.g1 PHD_FILE: MSMg01no427_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:40 2005
(536 letters)
>mm_chr1_88732198_88733131
Length = 934
Score = 986 bits (510), Expect = 0.0
Identities = 529/536 (98%), Gaps = 2/536 (0%)
Strand = Plus / Plus
Query: 1 atttctgtttaaactagctggctcctgttccctcttaataatcactttgtggtcccacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctgtttaaactagctggctcctgttccctcttaataatcactttgtggtcccacta 260
Query: 61 tttctaggtcataacaaatgcattaaaaagagggctggcctttggggaagcagcatttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctaggtcataacaaatgcattaaaaagagggctggcctttggggaagcagcatttaa 320
Query: 121 tttctttctcttcaactagaagtgatctagccttcattatgcctatttaagatgttctat 180
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctttctcttcaaccagcagtgatctagccttcattatgcctatttaagatgttctat 380
Query: 181 agggtgaatattcaatatactttaaaaggcctgtaacagacatggtatcatttggtatct 240
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 381 agggtgaatattcaatatactttaaaagacttgtaacagacatggtatcatttggtatct 440
Query: 241 gtgggcctgcaaacttcaaatgtggtataattcatctggtttagcttcccatgcttgggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgggcctgcaaacttcaaatgtggtataattcatctggtttagcttcccatgcttgggg 500
Query: 301 gacaatccttgtgtacctctctaagatagcttctaacctttttcattacttgtcttatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacaatccttgtgtacctctctaagatagcttctaacctttttcattacttgtcttatta 560
Query: 361 gtgtactaactagtcttaaaaggcacataaagaaatgatagtctagttttagtgaacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtactaactagtcttaaaaggcacataaagaaatgatagtctagttttagtgaacaca 620
Query: 421 tttgtggtaccgaaatgttgacatcacagtagatgatgagatgactggtccctttaagaa 480
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 tttgtggtactgaaatgttgacatcacagtaga--atgagatgactggtccctttaagaa 678
Query: 481 aatctgatgtaaaagccaatttacacttggaggaatcttccatctgttgaaaaaga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aatctgatgtaaaagccaatttacacttggaggaatcttccatctgttgaaaaaga 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 934
Length adjustment: 10
Effective length of query: 526
Effective length of database: 924
Effective search space: 486024
Effective search space used: 486024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
