Query= MSMg01no427_p08.b1 MSMg01no427_p08.b1 CHROMAT_FILE:
MSMg01no427_p08.b1 PHD_FILE: MSMg01no427_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:59 2005
(531 letters)
>mm_chr1_23712389_23713324
Length = 936
Score = 963 bits (498), Expect = 0.0
Identities = 523/534 (97%), Gaps = 7/534 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctatagttatcgactagaaaggagcatgaaggtttccttgtgtgattagggtt 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggaattcctatagaaat-gactagaaaggagcatgaaggtttccttgtgtgattagggtt 678
Query: 64 cttccatgactttgaccttcaacctcgaaggttacggctcggaacagagcctcagtggca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cttccatgactttgaccttcaacctcgaaggttacggctcggaacagagcctcagtggca 618
Query: 124 aacatctcactcttgattttgggtattgggattggagtacaattaatgaatctgggcaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aacatctcactcttgattttgggtattgggattggagtacaattaatgaatctgggcaga 558
Query: 184 tgacaagctgctgattttactgagtggtttcttgggagatcacaggcttactccatctca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgacaagctgctgattttactgagtggtttcttgggagatcacaggcttactccatctca 498
Query: 244 tagagtctatccattggggcagcatattattgttattcaccagataaacagctgctttaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tagagtctatccattggggcagcatattattgttattcaccagataaacagctgctttaa 438
Query: 304 tttaaaacagaggtaccaataggggcttgtcctgaaatcatggatgctccaggccgccag 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 tttaaaacagaggtaccaataggggcttgtcttgaaatcatggatgctccaggccgccag 378
Query: 364 ggacagtagctagatgggaaagctgtg---tcttttggatgagccatttattcaagcgcc 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 377 ggacagtagctagatgggaaagctgtgtcttcttttggatgagccatttattcaagcgcc 318
Query: 421 tgctgagatgtgtgcacagagcagaatgggtaaaggattgcccatttcaatcattctata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgctgagatgtgtgcacagagcagaatgggtaaaggattgcccatttcaatcattctata 258
Query: 481 acatctgacctatc---ttttttttttccagccatctttccccaagcccagtga 531
|||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 257 acatctgacctatcttttttttttttttcagccatctttccccaagcccagtga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 936
Length adjustment: 10
Effective length of query: 521
Effective length of database: 926
Effective search space: 482446
Effective search space used: 482446
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_p08.g1 MSMg01no427_p08.g1 CHROMAT_FILE:
MSMg01no427_p08.g1 PHD_FILE: MSMg01no427_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:59 2005
(437 letters)
>mm_chr1_23593943_23594778
Length = 836
Score = 712 bits (368), Expect = 0.0
Identities = 421/445 (94%), Gaps = 14/445 (3%)
Strand = Plus / Plus
Query: 1 tcttatcattttcttcacaatacacagggcagtgaagactttcatccccataaatcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttatcattttcttcacaatacacagggcagtgaagactttcatccccataaatcaaca 260
Query: 61 ggaagaaggcaaaacaatgaaatctcatataagagtgagtgagggttgggaagaggcagg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagaaggcaaaacaatgaaatcccatataagagtgagtgagggttgggaagaggcagg 320
Query: 121 gatggcgtttcacatattttcctcgagtaactcttgttttttaattatgacatttcagac 180
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 321 gatggcgtttcacatattttcctcgagtaactcctgttttt-aattatgacatttcagac 379
Query: 181 aataacctttgatcatattctttttccttccccacctccttccagattctcctcatctgc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatatcctttgatcatattctttttccttccccacctccttccagattctcctcatctgc 439
Query: 241 ctatgcatccaacttcatatttactctctccctctctccaaaaaaaaaaaaagaaaataa 300
||| | ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 440 ctacgtatccaccttcatatttactctctccctctctccaaaaaaaagaaa-gaaaataa 498
Query: 301 aaataaactttagaaaaggaaggaagggaggga----cggaggga----gggacggaggg 352
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 499 aaataaactttaaaaaaggaaggaagggagggagggacggagggacggagggacggaggg 558
Query: 353 acggagggacagagggagggaggagaaagnaccaatatgaatctggtatttatttattta 412
|||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 559 acggagggacggagggagggaggagaaagtaccaatatgaatctg----ttatttattta 614
Query: 413 tttatttatttatttatttatcaat 437
|||||||||||||||||||||||||
Sbjct: 615 tttatttatttatttatttatcaat 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 836
Length adjustment: 9
Effective length of query: 428
Effective length of database: 827
Effective search space: 353956
Effective search space used: 353956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
