Query= MSMg01no428_d16.b1 MSMg01no428_d16.b1 CHROMAT_FILE:
MSMg01no428_d16.b1 PHD_FILE: MSMg01no428_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:21 2005
(564 letters)
>mm_chr1_66337846_66338809
Length = 964
Score = 1023 bits (529), Expect = 0.0
Identities = 556/567 (98%), Gaps = 6/567 (1%)
Strand = Plus / Plus
Query: 1 ttgttaaactagcatggccgttaaaatattcaacaatatttggcatctctttttgtattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttaaactagcatggccgttaaaatattcaacaatatttggcatctctttttgtattt 260
Query: 61 tacagctgttccaatttcctttagatatcatacatgttatgttaaagattttaaggaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagctgttccaatttcctttagatatcatacatgttatgttaaagattttaaggaaac 320
Query: 121 ctaggataacaaactgttctcgtctcttgatctctggacagaaaacatgtcatggtaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ctaggataacaaactgttctcgtctcttgatctctggacagaaaacatgtcatgggaatt 380
Query: 181 ttgattttgaagtacaagttcttatgagatcaagtttttattttgtggttggtaaaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgattttgaagtacaagttcttatgagatcaagtttttattttgtggttggtaaaatga 440
Query: 241 tgttat---gtttaaaatcacttaccatacaaagtatggtgacctaaacgggaacatgca 297
|| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgg-agagggt--aaaatcacttaccatacaaagtatggtgacctaaacgggaacatgca 497
Query: 298 gcatgcttctgcaatcccagcacccctacgctgagatacaaagcagaggagaaactctca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcatgcttctgcaatcccagcacccctacgctgagatacaaagcagaggagaaactctca 557
Query: 358 gagatctctcccatgtgagcctggagtagatacaagacaaacccagcttcaacaagtatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagatctctcccatgtgagcctggagtagatacaagacaaacccagcttcaacaagtatg 617
Query: 418 ggggaacggcccctccacatgtgtgctgtagcatatacctatgcatgtgcatatacacac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggggaacggcccctccacatgtgtgctgtagcatatacctatgcatgtgcatatacacac 677
Query: 478 tttatccacctgatacacaaacatccatacacaactgcacacatttcttagcaaaaatta 537
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 678 tttatccacctgatacacaaacatccatacacaactgcacacatttcaaagcaaaaatta 737
Query: 538 taattgctttgacaactatgtaataaa 564
|||||||||||||||||||||||||||
Sbjct: 738 taattgctttgacaactatgtaataaa 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_d16.g1 MSMg01no428_d16.g1 CHROMAT_FILE:
MSMg01no428_d16.g1 PHD_FILE: MSMg01no428_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:21 2005
(566 letters)
>mm_chr1_66498367_66499332
Length = 966
Score = 1094 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Minus
Query: 1 actatttaacccatgttggcttgagcctggtgcaatctgagtttcaaatgccctagtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 actatttaacccatgttggcttgagcctggtgcaatctgagtttcaaatgccctagtgct 799
Query: 61 ggggttacagtcatgtgctactattcctggctctgttaatactagtaagctataatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ggggttacagtcatgtgctactattcctggctctgttaatactagtaagctataatttct 739
Query: 121 ggcctttgatttttattttaatattagtggaatatttccttccaaagaaaaagtaaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggcctttgatttttattttaatattagtggaatatttccttccaaagaaaaagtaaattg 679
Query: 181 cccatttccagctggatttttcctgcttttcttaaagtgtgtgtttgtgaacaggctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cccatttccagctggatttttcctgcttttcttaaagtgtgtgtttgtgaacaggctgct 619
Query: 241 tgaatagtgtgctattgccttggcaccttagcacctgagaacggttgtaggaaggaataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgaatagtgtgctattgccttggcaccttagcacctgagaacggttgtaggaaggaataa 559
Query: 301 taaattctatacaagagctaagagcatgcaaacttatcctctccattttcatagtgagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taaattctatacaagagctaagagcatgcaaacttatcctctccattttcatagtgagct 499
Query: 361 gacagagatatttcactaaccaagaaattaaaaactcacttaatgttagaatttttttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gacagagatatttcactaaccaagaaattaaaaactcacttaatgttagaatttttttgg 439
Query: 421 tgaaatataggttatttgtagtgtatgaatggacatgcatatgtaaaacttggactcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgaaatataggttatttgtagtgtatgaatggacatgcatatgtaaaacttggactcaaa 379
Query: 481 atagaaagtaattttaagttaattaaatacagatggttccattactgtataatttactga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atagaaagtaattttaagttaattaaatacagatggttccattactgtataatttactga 319
Query: 541 agtctatctggagaagaaatcccaat 566
||||||||||||||||||||||||||
Sbjct: 318 agtctatctggagaagaaatcccaat 293
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
