NNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTGCCATTACCAAGAAAAGGATTAAAAGTCTGAAAAC
TCTATACACGGCAGCCTTGGTTTCTTTTCTGTCTCAGGAGTCTATAAAAG
CATTCCCAGCTGCCACACTGCTCTCTCCCTTGACCTTGTGTTAGAGCACA
GCTATTTCCTCTTAGACCTGCACTGTGAATACTTGGTGGCAATGTTCTCC
CCACTTCCAATGAGGTCAGGGTCATTCCCTGGGCACAGCTGATGCTACTT
TCAAGCCTCTATTTTCTTTCTTGTTACATTTTGTGTTCTGCTCTCAACCC
TACAGGTTGCTCAGGCCAGCCTTCTGTCTCAGAATGTGTTAGAGTGCTGG
CAACAGGGAGTTTTTAGTTATCCTTGAGAGGACACCAGATAGAGGTTGAA
AAAGCTCTGTCTTAACTGGATGGAGTCCATTTGCTGGAGGCAGTGGAATG
CAGGAGGATGGTTAGATAGAGTGGGAGGATTCTATTACCTAAGGGACTTA
GTTCTGTATTCCATTCTCCCCCTCCTGCTGCCCATCGATCGTAATTGTCA
AGGACTTATTCGGTTTTTTCTATTTCAACCCCACATTCGACTACCTCTTT
TCCCCCTTTTCCCTATTCTCTCCTCTTCCTTATCCGCCCGCCCTGACACT
CTTTCTTACCCCTTTTTTTCTTGCCCCTTTCTCCCGATTTCCCACCGTTT
TTTCTCCCCTA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGCACTCCTCTAAAAT
AACTAAATGTAAAAATCAAAGTCAGTCATGGACTTTAACCTCAGCAATTT
AGAAAGTAGAGGCCGACAGATGCCTGTGAGTTTGAGAACAAGCTTGGTAT
ACATAGAGGGTTCAAGTAAGAGATAGTGAGATCATGTCTCAAAAAACAAA
AAACAAAAAATTTTAATCAGTTTAGAAAAATATTAATATTTCTTCTCTCT
TCCAAGATGCTTTCCTTGTTTTGACTAATTACCCTATCAAGTTGAAGAGG
TTGGCATTCAGTGAAAGGAGGGGAGAATCAGTCATACGGGAAAACAAGAC
CTCAGGAAACCTTTTCATTTTCACCTAGTACAGTAGAAATAATGTCTACC
TAGGGACTAGCACTCCAATTATTAAATCACACCAAAATTTACAATCCTTA
TCAATGCTTCCATCTGGACGTATCTGTCATTACATGGTCTGAGTTCCTCC
AGAGTACATGTGCTGGGATGTTGATGCCTCCCAATATCCTCGTTGGGGGG
GGGTGACTCTCTGGAATACTATTTCTGCAAAAACTTTCCCCCGGGACCTT
TAACTTTCCCTCCTTTTAGTGTGTCTCTATTCTCTGGTGGGCACGGTCCC
CCTTCTTTGTCCCGTTTTATTTCTCCCTCCCCTCTTTTTTTTTTTTGCCC
CCCC

Query= MSMg01no428_f03.b1 MSMg01no428_f03.b1 CHROMAT_FILE:
MSMg01no428_f03.b1 PHD_FILE: MSMg01no428_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:28 2005
         (471 letters)



>mm_chr1_10268886_10269756
          Length = 871

 Score =  841 bits (435), Expect = 0.0
 Identities = 459/467 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgccattaccaagaaaaggattaaaagtctgaaaactctatacacggcagcct 64
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgccaagacaaagaaaaggattaaaagtctgaaaactctatacacggcagcct 264

                                                                       
Query: 65  tggtttcttttctgtctcaggagtctataaaagcattcccagctgccacactgctctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggtttcttttctgtctcaggagtctataaaagcattcccagctgccacactgctctctc 324

                                                                       
Query: 125 ccttgaccttgtgttagagcacagctatttcctcttagacctgcactgtgaatacttggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttgaccttgtgttagagcacagctatttcctcttagacctgcactgtgaatacttggt 384

                                                                       
Query: 185 ggcaatgttctccccacttccaatgaggtcagggtcattccctgggcacagctgatgcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcaatgttctccccacttccaatgaggtcagggtcattccctgggcacagctgatgcta 444

                                                                       
Query: 245 ctttcaagcctctattttctttcttgttacattttgtgttctgctctcaaccctacaggt 304
           |||||||||||||||||||||||| ||||||  |||||||||||| ||||||||||||||
Sbjct: 445 ctttcaagcctctattttctttctcgttacagcttgtgttctgctttcaaccctacaggt 504

                                                                       
Query: 305 tgctcaggccagccttctgtctcagaatgtgttagagtgctggcaacagggagtttttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgctcaggccagccttctgtctcagaatgtgttagagtgctggcaacagggagtttttag 564

                                                                       
Query: 365 ttatccttgagaggacaccagatagaggttgaaaaagctctgtcttaactggatggagtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttatccttgagaggacaccagatagaggttgaaaaagctctgtcttaactggatggagtc 624

                                                          
Query: 425 catttgctggaggcagtggaatgcaggaggatggttagatagagtgg 471
           |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 catttgctggaggcagtggaatgcagaaggatggttagatagagtgg 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no428_f03.g1 MSMg01no428_f03.g1 CHROMAT_FILE:
MSMg01no428_f03.g1 PHD_FILE: MSMg01no428_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:28 2005
         (444 letters)



>mm_chr1_10488176_10489019
          Length = 844

 Score =  835 bits (432), Expect = 0.0
 Identities = 441/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagcactcctctaaaataactaaatgtaaaaatcaaagtcagtcatggactttaacc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cttcagcactcctctaacataactaaatgtaaaaatcaaagtcagtcatggactttaacc 756

                                                                       
Query: 61  tcagcaatttagaaagtagaggccgacagatgcctgtgagtttgagaacaagcttggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tcagcaatttagaaagtagaggccgacagatgcctgtgagtttgagaacaagcttggtat 696

                                                                       
Query: 121 acatagagggttcaagtaagagatagtgagatcatgtctcaaaaaacaaaaaacaaaaaa 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 695 acatagagggttcaagtaagagatagtaagatcatgtctcaaaaaacaaaaaacaaaaaa 636

                                                                       
Query: 181 ttttaatcagtttagaaaaatattaatatttcttctctcttccaagatgctttccttgtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 635 ttttaatcagtttagaaaaatattaatatttcttctctcttccaagatgcttgccttgtt 576

                                                                       
Query: 241 ttgactaattaccctatcaagttgaagaggttggcattcagtgaaaggaggggagaatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgactaattaccctatcaagttgaagaggttggcattcagtgaaaggaggggagaatca 516

                                                                       
Query: 301 gtcatacgggaaaacaagacctcaggaaaccttttcattttcacctagtacagtagaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtcatacgggaaaacaagacctcaggaaaccttttcattttcacctagtacagtagaaat 456

                                                                       
Query: 361 aatgtctacctagggactagcactccaattattaaatcacaccaaaatttacaatcctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatgtctacctagggactagcactccaattattaaatcacaccaaaatttacaatcctta 396

                                   
Query: 421 tcaatgcttccatctggacgtatc 444
           ||||||||||||||||||||||||
Sbjct: 395 tcaatgcttccatctggacgtatc 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)