BAC Information

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BAC

Clone NameMSMg01-428G12
Chromosome1 (Build37)
Map Location 124,995,149 - 124,995,589
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428G12.T7 (MSMg01no428_g12.b1)MSMg01-428G12.TJ (MSMg01no428_g12.g1)
ACCAG521379AG521380
length754742
length of high quality
(start - end)
246 (73 - 318)441 (79 - 519)
definitionCHROMAT_FILE: MSMg01no428_g12.b1 PHD_FILE: MSMg01no428_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:34 2005CHROMAT_FILE: MSMg01no428_g12.g1 PHD_FILE: MSMg01no428_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGC
GGAATTCTTTGTTTACTTCAGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGCGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
TTTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCTCNTTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTATAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACACTATAACAACCAGTTGTGCTAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGACGGTTTTAGCTCCCTTGTCGAAGATCCCG
CGACCTTATGGGTGTGTGCTCATTTTTGTTTCTTCATTCCCACTCCCCTG
GGCCACCCTGTTCTGCCTCTATACATCCCCCCTTGTCACCTTTTTATCCC
TTTTGTTTTTGCTCTTAAACCCCTTACGTCTGGGCTGCCTGTATTTTCCT
TCTAATTTTCTTTTTTCCCTTCTACAAATTTCTCTTCTTATTCTTTGCCC
CTTC
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCTTGGGATTTTCACTAAG
ACCCTGAGCTTATTGGTTCAAGAGACCTCCTGCTTCTACTCTCCCCAGCA
CTGCATGGTACTTCTTTTAAAAGCCATACCTGGCTTTTAGAGTGTATGTT
TTAGAGAATTAACTCAGGTTTTTATGCTTGCTCAACAAATTCTTCATTTA
CTACACCAGCTCCTCATCCCCAAGGAACCAAGGAACTGTATTCATCAGTT
ATTACTAGATTATTTGCTCTGTTTTCACATCATGGGTACTTATATTTTCC
TCTAAAATGCTACTTCAACAAGCTTCTGAGTTAACTTTTTAATCAGCATG
TCTCTAGGAAACAATAGGACAATCAGTGCCGACTTGGCTCTGCAAATATG
AGCAATTCCATAAACTATCAGTGAATGTGATTGCCATGTAATTCAATATA
TTACAATTTGTATATAATGTAAGCTACTCAGTGTATAGAAACTCAGGGAT
GGATTGCGATATTTTATGAACAAAGTTAATTTAATATATAGCGGCCAGGC
ATTGGTGTTGCATACCTTTAATTTCAGCATCTGGGACGCACAGGCAGGGG
GATTTCTGAGCTCCAGGCCAGAATGGTCCACAAAGCGAGTTCCAGGGACA
ACCAGGGTTCATACATAAAGTGTAATGAAATGATACTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_g12.g1 MSMg01no428_g12.g1 CHROMAT_FILE:
MSMg01no428_g12.g1 PHD_FILE: MSMg01no428_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:35 2005
         (441 letters)



>mm_chr1_124994949_124995789
          Length = 841

 Score =  791 bits (409), Expect = 0.0
 Identities = 433/441 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccttgggattttcactaagaccctgagcttattggttcaagagacctcctgcttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccttgggattttcactaagaccctgagcttattggttcaagagacctcctgcttcta 260

                                                                       
Query: 61  ctctccccagcactgcatggtacttcttttaaaagccatacctggcttttagagtgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ctctccccagcactgcatggtacttcttttaaaagccatacctggcttttaaagtgtatg 320

                                                                       
Query: 121 ttttagagaattaactcaggtttttatgcttgctcaacaaattcttcatttactacacca 180
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaaagaattaactcaggtctttatgcttgctcaacaaattcttcatttactacacca 380

                                                                       
Query: 181 gctcctcatccccaaggaaccaaggaactgtattcatcagttattactagattatttgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcctcatccccaaggaaccaaggaactgtattcatcagttattactagattatttgct 440

                                                                       
Query: 241 ctgttttcacatcatgggtacttatattttcctctaaaatgctacttcaacaagcttctg 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagctcacatcatgggtacttatattttcctctaaaatgctacttcaacaagcttctg 500

                                                                       
Query: 301 agttaactttttaatcagcatgtctctaggaaacaataggacaatcagtgccgacttggc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaactttttaatcagcatgtctctaggaaacaataggacaatcagtgccgacttggc 560

                                                                       
Query: 361 tctgcaaatatgagcaattccataaactatcagtgaatgtgattgccatgtaattcaata 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tctgcaaatatgagcaattccataaactatcagtgaatgtgattgtcatgtaattcaata 620

                                
Query: 421 tattacaatttgtatataatg 441
           |||||||||||||||||||||
Sbjct: 621 tattacaatttgtatataatg 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)