BAC Information

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BAC

Clone NameMSMg01-428M09
Chromosome1 (Build37)
Map Location 66,372,666 - 66,372,906
singlet/doubletsinglet
Overlap geneMtap2
Upstream genePthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428M09.T7 (MSMg01no428_m09.b1)MSMg01-428M09.TJ (MSMg01no428_m09.g1)
ACCAG521661AG521662
length766818
length of high quality
(start - end)
241 (75 - 315)129 (81 - 209)
definitionCHROMAT_FILE: MSMg01no428_m09.b1 PHD_FILE: MSMg01no428_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:03 2005CHROMAT_FILE: MSMg01no428_m09.g1 PHD_FILE: MSMg01no428_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCG
CGGAATTCAAGACTTACCTACAACAACTCTTACCATATTTTGTAAAGACT
TTTCCACTTGAAATTGTCACAAAAGGCTCAAGTGTCTGAAATAAATAGTG
CAGAAAGTTGTGTCATAAATGTGGAGAAAAATATCCAAACTCAAGGACTG
GTGACACCCTAAAAATCACCATGGAACTAACAGTTATATAGTATGTAGTA
AGACCCTCTTCTTGTGAAAAAGTAGCTCCAACAGAATCGTTCCTAAGGTC
AGCTGGTGCAGTAGAGCATTTTTTTTTAGCACTTCTATCCCTGCGTACCA
TCCTAGGCATGTGTCATTTCCTCAGGTACCCATTGTATGGATTTATAGCA
GGATGAATTATTGGCTCCATAATCCATTAATTATGTACTATACCATATCT
GTAACTACTCTGCATGAGATCTACCACTACCTCTATTTACCCTACTTCCT
GTTCTTCCCTGCTTTTTCTTCTTCCTTTCATCCTATTTCCCTTATTCTCT
CTACCCTTCCCTTTTCCTTTTCCTCCTTTCACATCCTCATTTCTTTCCCT
CCTTTTTTCCTTTTCTCTCCCATCTTTTTTTTTATTTTACTTTCCCTGAC
TATTTTTTCCCTTTTTTATCCCCCTTCCTCTCCACTTTTTTATTTTCCAC
CCTTTTTTCTTCTTGTCCTTTTTCCCCCTTCCTTCCCTTTTTTTTTTTTC
CCTCCTTTTCTTTTCC
TCGATTGATGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGGCAAGAATTTTATTGAGTA
TTTTTGCATCAATATTCATAAGGGAGATTGGTCTGAAGTTCTTTTGTTTG
TTTGTTTGTTCTTTGTGTGGTTTAGGTATAAGCGCAACATTTTGTCTTTT
ACTGTGTAGTGTAATGCTAAGTGCAGCCCCCAATACCAGAAGTCTGTTTG
TATCTCCTGCAATCCTGCCCTCAAATTTATTCTGATTGGTGAATAAAGAT
GCCAACACAAAATATATGTTTTTTTTTACACATACGCGCCCGTTTACTCT
CTTGTTTTTCTCTTCTTTTCCCCCCTCCTTCTTTTTTTTTCTTTCATCCT
TTCCTTCTTTTATTATACTTCTCCTTTTTTTCCTTTTTCCTTTCCTTCTT
CTCCCATCTCCTTTTTTTATCTTTTTCCTACCTTCTTTCCTTTTTTTTTT
TTTCTTTTTCTTTTTTACCTTCCCCCCCCCCTCCCCTCTCCTATTTTTTT
CTTCTCCCTATTTTTTTCATTTTATTCTATCTCCCACTCTTCCTTTTTTT
TCTTTATTTTTCCTCTCCCTTTTCCCTTTCCTTCTCTCCTTTTTTTTTTA
TTTACTCCCCTTCCTTCCTCTTTACTTTTTTTCCACCCTCCTCATTTTTT
TCCTTTTATATTATTTTTCTTTTATTATATACACACCATCTCAAACTTTA
TTTATCTTCTATTTATTCTTTCTCATCATCTCTTTTATTCTTCCCCTCTC
TTATTTTCCACTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_m09.b1 MSMg01no428_m09.b1 CHROMAT_FILE:
MSMg01no428_m09.b1 PHD_FILE: MSMg01no428_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:03 2005
         (241 letters)



>mm_chr1_66372466_66373106
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcttaccatattttgtaaagacttttccacttgaaattgtcacaaaaggctcaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactcttaccatattttgtaaagacttttccacttgaaattgtcacaaaaggctcaagtg 260

                                                                       
Query: 61  tctgaaataaatagtgcagaaagttgtgtcataaatgtggagaaaaatatccaaactcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaaataaatagtgcagaaagttgtgtcataaatgtggagaaaaatatccaaactcaa 320

                                                                       
Query: 121 ggactggtgacaccctaaaaatcaccatggaactaacagttatatagtatgtagtaagac 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ggactggtgacaccctaaaaatcaccagggaactaacagttatatagtatgtagtaagac 380

                                                                       
Query: 181 cctcttcttgtgaaaaagtagctccaacagaatcgttcctaaggtcagctggtgcagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcttcttgtgaaaaagtagctccaacagaatcgttcctaaggtcagctggtgcagtag 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)