BAC Information

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BAC

Clone NameMSMg01-428P08
Chromosome1 (Build37)
Map Location 74,855,110 - 74,855,275
singlet/doubletsinglet
Overlap genenone
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a
Downstream geneLOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428P08.T7 (MSMg01no428_p08.b1)MSMg01-428P08.TJ (MSMg01no428_p08.g1)
ACCAG521802AG521803
length780801
length of high quality
(start - end)
236 (79 - 314)166 (80 - 245)
definitionCHROMAT_FILE: MSMg01no428_p08.b1 PHD_FILE: MSMg01no428_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:17 2005CHROMAT_FILE: MSMg01no428_p08.g1 PHD_FILE: MSMg01no428_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTCTTTACACCAAGCTGGATCTCAGAGATCCACCTGT
CTTGCCTCCTGGGCGCAGGATTAAAAGCATTCACCATAATTCTTTGTTCT
TTTTTAAAAATTAATTTTTGGGCTAGAGAGATGGCTCAGAGGTTAAGAGC
ACTGACTGTTCTTCCGGACGTCCTGAGTTCAATTCCCAGCAACCACATGG
TGGCTCACAACCACCCATAATGAGATCAGATGCCCTCTTCTGGTGTGTCT
GAAGACAGCTACAGCGTACATATTATTTTTAAATAAATCTTTTAAAAATT
AATTTCTATTTTTGGGAGCTTTTTGAGACATCTCTGGCTGTTCTGGAACT
CCTGTAGACCAGGCTGGCCTTAAACTCACAAAGATCTGCCTATGCCTCCT
TAGTGCTGGGATTAACGGTGTGCACCACCACTGTCCAGCTTTCTTCTGGT
CATTTTTACTACATAAAATCTTTTTTGCCTTCCTACTGCGCTAATATAGT
CCTCTTCGTACCTCTGGCACCATTCCTCTTTATCACACCCCTCGATTTAA
TTGCTCGACCCCCCCCCCATGTATCTACTCCGTTCTTGTCTCCTTTTAAA
GCCATATCCCCCGCCTTTTTCTCCCTCCTATTACCTCTTCTCTCCTCTCC
TTATTTCTTTTCTCTCTTTTTTTCTCCCTCCCCCTCTTTTCTTTTTTTCT
CCTTCCTCCCTCTCTTTTTTTCTTTTCTTC
NATTGCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGAACAAATATGCCGTTA
AATTTAGGACTTTTACATTAAGCTCGGGGAGGCTGGGGGTGGGGAGTAAT
CGTGGGGCGTGGAAAGACAGGTCTCACATCCTGAAGTCAGAGCTTGCCAC
CTTGTGAGGTTCAGAGAAGCTAGGTCACTGGTCTGGGTTTTAGGCACACA
CTCATGCAGAACAGAGGGTCAGTGAGATCGTGTCGGTCATAAAGCAAAGA
GCCTGCATGGCAGGATTTTTTTTTTTTTGCGAGTCAGACTGTGCTGGGTT
TCCCGTAGCTTTATTAATGACTGTAATCCGAGTACCATGCATCATGATTA
TATATCCCGTTATACTGCTCCCCAATCTTACATTATCATTCCCGCATAGC
TGATGTTCTCTCCTCTTCCTCTCTTACCAGAGTCTCTCCCCTGTCCTTCT
CTCCTTTCATTGACCGCTCTTCCTTTCCTAATCCGTTACTCCTTATGTTT
CTTATTTTCTCTTCTGTCCCTTCTCCCCCCTTCTTTTATTTCTACTCTAT
TGCTTTCATATTTCCTCTTTGTTTTTTTTTTTCTTTTCCACCTTCTTTTC
ATCTCCATTCCCTCTTTTTTCATTTCTTCTCTTACAACCCTCTTTTTCTA
TTTCACATTCTGCTTCCCTACCTTTTCTCTCCCCCTTTTATCTTCCTTTT
CACCCCACTTCCTCTCCATTTTCCCTTTTTTCATTTCCCTATTCCAATTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_p08.g1 MSMg01no428_p08.g1 CHROMAT_FILE:
MSMg01no428_p08.g1 PHD_FILE: MSMg01no428_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:17 2005
         (166 letters)



>mm_chr1_74854910_74855475
          Length = 566

 Score =  298 bits (154), Expect = 1e-85
 Identities = 163/166 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgaacaaatatgccgttaaatttaggacttttacattaagctcggggaggctggggg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 366 cattgaacaaatatgccgttaaatttaggacttttacagtaagctcgggaaggctggggg 307

                                                                       
Query: 61  tggggagtaatcgtggggcgtggaaagacaggtctcacatcctgaagtcagagcttgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggggagtaatcgtggggcgtggaaagacaggtctcacatcctgaagtcagagcttgcca 247

                                                         
Query: 121 ccttgtgaggttcagagaagctaggtcactggtctgggttttaggc 166
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 ccttgtgaggttcagagaagctaggtcactgggctgggttttaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)