Query= MSMg01no429_a12.b1 MSMg01no429_a12.b1 CHROMAT_FILE:
MSMg01no429_a12.b1 PHD_FILE: MSMg01no429_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:23 2005
(553 letters)
>mm_chr1_21274329_21275277
Length = 949
Score = 679 bits (351), Expect = 0.0
Identities = 434/479 (90%), Gaps = 34/479 (7%)
Strand = Plus / Minus
Query: 101 gtgtgtacacttgtgcttgctgtggcacatgggtggagatcagagaacaactctcctcat 160
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 949 gtgtgtacacttgtgcttgctgtggcacatgtgttgagatcagagaacaactctcctcat 890
Query: 161 gccctgtgagctctggggattgaactcaggccatcaggtttagcagcaagcaacctcact 220
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gacctgtgagctctggggattgaactcaggccatcaggtttagcagcaagcaacctcact 830
Query: 221 tgctgagccatcttgctcaccctcaaaggttattaaa--caaaactcaacaatcaca-ac 277
||||||||||||||||||| | |||||||||| ||| |||||| |||||| |||| ||
Sbjct: 829 tgctgagccatcttgctcaacatcaaaggtta--aaaagcaaaacacaacaa-cacacac 773
Query: 278 acac----------------------tttcactgccttttggtgaaagtccaggatgcag 315
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 772 acacagacacacacacaatcactcactttcactgccttttggtgaaagtccaggatgcag 713
Query: 316 catagcttccaatagcttctaaaagtccccatcactggggtgggtatcttccagatacag 375
| || ||||||| |||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 712 cgtaacttccaacagcttctaaaagtctccatccctggggt----atcttccagatacag 657
Query: 376 caagtgtttctacaaccaaccgcacaactcaccctggtttcagtgtcaatcacagagtga 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caagtgtttctacaaccaaccgcacaactcaccctggtttcagtgtcaatcacagagtga 597
Query: 436 gcccagtcaaccttg-ctggttgtcaaggaagcaaaccacctgccatttctagtccagct 494
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gcccagtcaaccttggctg-ttgtcaaggaagcaaaccacctgccatttctagtccagct 538
Query: 495 gatggaagccatgtgattagcattgctggagtcagaggggatttgcctgtccttttaag 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gatggaagccatgtgattagcattgctggagtcagaggggatttgcctgtccttttaag 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 949
Length adjustment: 10
Effective length of query: 543
Effective length of database: 939
Effective search space: 509877
Effective search space used: 509877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_a12.g1 MSMg01no429_a12.g1 CHROMAT_FILE:
MSMg01no429_a12.g1 PHD_FILE: MSMg01no429_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:23 2005
(343 letters)
>mm_chr1_21136017_21136759
Length = 743
Score = 478 bits (247), Expect = e-139
Identities = 280/299 (93%), Gaps = 13/299 (4%)
Strand = Plus / Plus
Query: 1 agcatccatgtttcctgagttgaacattagagtgaaaaccagctgtcagtgaacaggagc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agcatccatgtttcctgagttgaacattagattgaaaaccagctgtcagtgaacaggagc 260
Query: 61 agcaaatgactgccacaaagaaaacaggggccatgctcttcactgcgtgagagtcactga 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 261 agcaaatgactgccacaaagaaaacaggggccatgctcttcactacgtgagactcactga 320
Query: 121 ggcacaagaagccatgtagttgggtaccactgctgtaggctatcagactgaggcattgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcacaagaagccatgtagttgggtaccactgctgtaggctatcagactgaggcattgaa 380
Query: 181 cgtgtatcagttatagaatgacatgcatggaaaccattgagcaatccagagagcaacaat 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 cgtgtatcagttatagaatgacatgcatgcaaaccattgagcaatccagagagcaacaa- 439
Query: 241 atggttattattgtttgattaggaaaataaatcttcaacaaaatccaatactcattgtg 299
|||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 ------------gtttgactaggaaaataaatcttcaacaaaatccaacactcattgtg 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
