BAC Information

Click to search

BAC

Clone NameMSMg01-429E01
Chromosome1 (Build37)
Map Location 94,921,615 - 95,077,200
singlet/doubletdoublet
Overlap geneKif1a, Agxt, 2310007B03Rik, E030010N08Rik
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12
Downstream geneSned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429E01.T7 (MSMg01no429_e01.b1)MSMg01-429E01.TJ (MSMg01no429_e01.g1)
ACCAG522025AG522026
length730728
length of high quality
(start - end)
568 (41 - 608)441 (69 - 509)
definitionCHROMAT_FILE: MSMg01no429_e01.b1 PHD_FILE: MSMg01no429_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:40 2005CHROMAT_FILE: MSMg01no429_e01.g1 PHD_FILE: MSMg01no429_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,921,615 - 94,922,181)(95,076,760 - 95,077,200)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTTT
TTTTGCCTCTGCTTGCTAACTCCCATCTGTGCACAGTAGGCATCTCACAG
CAGATATGCTCTGAATATAGAGTCAGGGCCCTGCCAGCATTTCCCAGGCT
GTGTCACTGCCCCTGAGGTAGCCCACAATTGTTATCTAAGTGATCTGGCT
CTATGTGCCCTTTAGATGACCTGGCTCCCACCTTCTCCAGACTCCTCCTT
TGCTATTGTTGTCCAGAAGAAGCACATTACAGTCCTTCACTAGGCCTCAG
AAGAGGGCCACAGCCCACATCTGGTCATAGACCTGGTGACTGAAGATCTG
AGGGTAGGAGGGGCAGTGAAGGGCTTCTACTTTTGCATTTTCTGGGATAT
TGATGCAATATCTAGTGATGATGCAGCCATCCTGTAGTCTCAAACCTGAC
ATCTAAGCACTAAAGATATAGGCATGTGCTAGGATTGAGCAATGCCATTA
AAAGCATATGGGTCTACTCAAGGACTTGAAGCATTCTCTGAGAAGAGAGT
GGGGTCCATGGACCTCCATGTCACTTTGCAAGCCCTTCAAGCTATAGGAG
GTGTTGTGCATGTGGCTATCTTGCCTCAATGTANGCACAGAGCGTCATGT
ACATTTTCTCCCGGTAAGGGGTGACACCATTCAGCACGAGAGAGTTATGC
ATGGAACTGCCCCGGCTGCTTCAACTGGGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTGGAGCCTGTTCCTGCAGTGTGTTGATAAG
AAAGCTTTGTGTGTGGGGCTAGATGAGTGACAGAAACAAAGCTCAGGGTG
TCCCTGCTCAACCTAACCTAAAGTGTCAACCTTTAGGCTTTTCACTATGG
TGAAAAAACAAAACAAAACCCCAAAAACAAAAAAAACAAGGATGGATAAA
ATCAAGACACTGATGGTGTAACAATGTCATGAGTGCTGAGGTCAGCTCCG
TGTGGCAGTGATTAATGGCCTTGTGGCTATCTGCATGACTCCTGAGGACC
CTACGAAGAGAGGGTGGTTGGGAATATGGGGCTGGGAGAGTCTGAGGTGG
ACAGCCAGGGACACAGGGCAGACCTAATGGCATGGTTCCCTGAGGCCAGG
CTCCAGTGCCTGCTGTGAGGCCAAGGCCAGGCTCCAGTACCCGATGTAAG
GCTTCCCTGGCACCTGAGCAGTCTCAGCCTCACCTGAGAGTGGCTCCTCA
CCCAGGCTGCTCGACACGATCTCTCGGATACGGGCTGGCACAGCAGTGGT
TGAAGCCTGTTGACCTTCCCCTCGCACAGTTACCCCCTGGTTTTCCCTTC
TGCCCATGGGACTTCCGATGCCGGCCCCCTACTTCTGAACAACCCTCCAT
ACCTTCGCTTCTTATGGCCCCCTGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_e01.b1 MSMg01no429_e01.b1 CHROMAT_FILE:
MSMg01no429_e01.b1 PHD_FILE: MSMg01no429_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:40 2005
         (568 letters)



>mm_chr1_94921414_94922381
          Length = 968

 Score = 1081 bits (559), Expect = 0.0
 Identities = 565/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattctttttttgcctctgcttgctaactcccatctgtgcacagtaggcatctcacagc 61
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctttttttgcatctgcttgctaactcccatctgtgcacagtaggcatctcacagc 261

                                                                       
Query: 62  agatatgctctgaatatagagtcagggccctgccagcatttcccaggctgtgtcactgcc 121
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 agatatgctctgaatatagagtcagggtcctgccagcatttcccaggctgtgtcactgcc 321

                                                                       
Query: 122 cctgaggtagcccacaattgttatctaagtgatctggctctatgtgccctttagatgacc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctgaggtagcccacaattgttatctaagtgatctggctctatgtgccctttagatgacc 381

                                                                       
Query: 182 tggctcccaccttctccagactcctcctttgctattgttgtccagaagaagcacattaca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggctcccaccttctccagactcctcctttgctattgttgtccagaagaagcacattaca 441

                                                                       
Query: 242 gtccttcactaggcctcagaagagggccacagcccacatctggtcatagacctggtgact 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtccttcactaggcctcagaagagggccacagcccacatctggtcatagacctggtgact 501

                                                                       
Query: 302 gaagatctgagggtaggaggggcagtgaagggcttctacttttgcattttctgggatatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaagatctgagggtaggaggggcagtgaagggcttctacttttgcattttctgggatatt 561

                                                                       
Query: 362 gatgcaatatctagtgatgatgcagccatcctgtagtctcaaacctgacatctaagcact 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gatgcaatatctagtgatgatgcagccatcctgtagtctcaaacctgacatctaagcact 621

                                                                       
Query: 422 aaagatataggcatgtgctaggattgagcaatgccattaaaagcatatgggtctactcaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaagatataggcatgtgctaggattgagcaatgccattaaaagcatatgggtctactcaa 681

                                                                       
Query: 482 ggacttgaagcattctctgagaagagagtggggtccatggacctccatgtcactttgcaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggacttgaagcattctctgagaagagagtggggtccatggacctccatgtcactttgcaa 741

                                      
Query: 542 gcccttcaagctataggaggtgttgtg 568
           |||||||||||||||||||||||||||
Sbjct: 742 gcccttcaagctataggaggtgttgtg 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_e01.g1 MSMg01no429_e01.g1 CHROMAT_FILE:
MSMg01no429_e01.g1 PHD_FILE: MSMg01no429_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:41 2005
         (441 letters)



>mm_chr1_95076560_95077400
          Length = 841

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggagcctgttcctgcagtgtgttgataagaaagctttgtgtgtggggctagatgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cttggagcctgttcctgcagtgtgttgataagaaagctttgtgtgtggggctagatgagt 582

                                                                       
Query: 61  gacagaaacaaagctcagggtgtccctgctcaacctaacctaaagtgtcaacctttaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gacagaaacaaagctcagggtgtccctgctcaacctaacctaaagtgtcaacctttaggc 522

                                                                       
Query: 121 ttttcactatggtgaaaaaacaaaacaaaaccccaaaaacaaaaaaaacaaggatggata 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 521 ttttcactatggtgaaaaaacaaaacaaaacccaaaaaacaaaaaaaacaaggatggata 462

                                                                       
Query: 181 aaatcaagacactgatggtgtaacaatgtcatgagtgctgaggtcagctccgtgtggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaatcaagacactgatggtgtaacaatgtcatgagtgctgaggtcagctccgtgtggcag 402

                                                                       
Query: 241 tgattaatggccttgtggctatctgcatgactcctgaggaccctacgaagagagggtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgattaatggccttgtggctatctgcatgactcctgaggaccctacgaagagagggtggt 342

                                                                       
Query: 301 tgggaatatggggctgggagagtctgaggtggacagccagggacacagggcagacctaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 341 tgggaatatggggctgggagagtctgaggtggacagccagggacacagggcagtcctaat 282

                                                                       
Query: 361 ggcatggttccctgaggccaggctccagtgcctgctgtgaggccaaggccaggctccagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggcatggttccctgaggccaggctccagtgcctgctgtgaggccaaggccaggctccagt 222

                                
Query: 421 acccgatgtaaggcttccctg 441
           |||||||||||||||||||||
Sbjct: 221 acccgatgtaaggcttccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)