BAC Information

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BAC

Clone NameMSMg01-429G10
Chromosome1 (Build37)
Map Location 156,018,988 - 156,019,273
singlet/doubletsinglet
Overlap genenone
Upstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429G10.T7 (MSMg01no429_g10.b1)MSMg01-429G10.TJ (MSMg01no429_g10.g1)
ACCAG522139AG522140
length734738
length of high quality
(start - end)
529 (38 - 566)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no429_g10.b1 PHD_FILE: MSMg01no429_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:52 2005CHROMAT_FILE: MSMg01no429_g10.g1 PHD_FILE: MSMg01no429_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
ACTTCTGCTTGTAATGGTTGGAGTGAGAAATGTCCCCCCATGGCCTCAGG
TATCTGAGCACTTCTTCCCCAGTGGGTGGTGCTCTTTGGGGATTTTATAG
AATCTAAGGGAGCTCAGCCTTGCTGCAGGCAGCTCAGGGCCCTGAATGGG
CTTTGAGGCTTTATAGCCACAACTCCCCAGTCCCCTGTCATTGCTTCTTG
TGTGTGCTTGAGGGGTCATCTCTTAGCTCGCTGCTCTGGCCTCCTGCTGC
TGGGCCTTTTTTGTCTTTATGGGATCTATCCCTTGGTACTGTAAACTCTT
GGCTTTATTTGGTTTTTAAGATTTCTTTCTTTTTATTTTATGTGTATGGT
TGTTTTGTCTGTGTACCACATGCGTGCAGTGTCTGTGGAGGGCACTGGAG
ACCAGGGAACTGGAGTTGCAAAGAGTTGTTAGCTACCATATGGGTTTGGG
GAAATCAAACTAGGGTCCTTTGCCAAAGCAAAAGCAGTACGTGCTCTTAT
TCAGTGAGCCATTTCTCTAGCCCCAAGCTCTGTTCTGCAAGTTACTCTGG
GCCATGACCTTTTATCCCAGGGACCGAAGCTAAGTAGTTCACTGGTTAAC
GGCACCTTTATCTTTCTTCATTTCTCCTACCCTTCCAGTGACTACCCCCT
CTGAATCCCAGTCCCGACTGTTTCCTCCCTACTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATATTGGTACCAAGAACTAAACATC
CAGAGGGGAAGGATCAGCATTTAGTGAGGAACAAGACAAAGTGGCCAGGG
AATTTATTCTGGCAACAAGGTCTATATAAAATACTGGAGTGATGGTCACT
TAATATTGTACTATATATATCAATTACTAAGTTGTGCTGATCAAGCGTCA
CAATATTCTTTTCCAGCAACATGTTTAAGGGAGAAGATTGACGTGCTGGG
GTGCATATGGAACAGTCTTTTTTGGTTGTAGTGGTGCAAGCTTACAGGAT
AAGGCTGGAAATGTAGAGGTAGGTGGATCACACATTCAAGGGCAGCCTGG
GTTATATATTTTGCAATGTGTGGTGGCGCAGACCCTTGATCCTAACACTT
ATGACGCAGAGGCAAGAGAATTCCTGTGTGACTGACGGCAACTTGCCTCA
TATGGCAGTTTAGGTCACCCTCTCTCAAAGAGACTGACAGACTTATTTAG
ATTGAACACCGTTCAGACTCATTTAAATTATTGTTTCCCCCCCCCCCTAT
TTTTTCAAACCCCCCCCCCCCCCCTTTTTCTCTTATTCCTCCCCGCCGTT
TTTTCTTTTTTTTTTTTTTCCCACTTCTTCCCCCTCCCCCCCCCTTTTAC
CCTTCCTCCCCGCCTCCTTTTTTCCCCCCCCCCACGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_g10.g1 MSMg01no429_g10.g1 CHROMAT_FILE:
MSMg01no429_g10.g1 PHD_FILE: MSMg01no429_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:52 2005
         (286 letters)



>mm_chr1_156018788_156019473
          Length = 686

 Score =  516 bits (267), Expect = e-151
 Identities = 281/291 (96%), Gaps = 10/291 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatattggtaccaagaactaaacatccagaggggaaggatcagcatttagtgaggaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcatattggtaccaagaactaaacatccagaggggaaggatcagcatttagtgaggaaca 427

                                                                       
Query: 61  agacaaagtggccagggaatttattctggcaacaaggtctatataaaatactggagtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agacaaagtggccagggaatttattctggcaacaaggtctatataaaatactggagtgat 367

                                                                       
Query: 121 ggtcacttaatattgtactatatatatcaattactaagttgtgctgatcaagcgtcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtcacttaatattgtactatatatatcaattactaagttgtgctgatcaagcgtcacaa 307

                                                                       
Query: 181 tattcttttccagcaacatgtttaagggagaagattgacgtgctggggtgcatatggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tattcttttccagcaacatgtttaagggagaagattgacgtgctggggtgcatatggaac 247

                                                              
Query: 241 agt-----cttttttggttgtagtggtgcaagcttacaggataaggctgga 286
           |||     |     |||||||||||||||||||||||||||||||||||||
Sbjct: 246 agtcagggc-----tggttgtagtggtgcaagcttacaggataaggctgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)