BAC Information

Click to search

BAC

Clone NameMSMg01-429H19
Chromosome1 (Build37)
Map Location 91,042,186 - 91,042,638
singlet/doubletsinglet
Overlap geneSh3bp4
Upstream geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
Downstream geneLOC383542, EG665688, Centg2, Gbx2, Asb18, Iqca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429H19.T7 (MSMg01no429_h19.b1)MSMg01-429H19.TJ (MSMg01no429_h19.g1)
ACCAG522203AG522204
length741739
length of high quality
(start - end)
453 (67 - 519)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no429_h19.b1 PHD_FILE: MSMg01no429_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:59 2005CHROMAT_FILE: MSMg01no429_h19.g1 PHD_FILE: MSMg01no429_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGACCTCCGGAAACCATAGAGGATCGGAACTGTAACAGAAGAGAGAAGA
GACACCTTTCTTGGGGGTCCCATGACATTTCCAACAGCGTCCCTGTGACT
CAGCCCAGTGTGACCCATGCCTGTCTACCTCAGGAAGCTCATCCGAGTTT
TGGACACCTGCTCTAGCACTCACCATCACCAGCTCCTTCTGGAAGGACTT
CCGGTCCTTGTTGTCAGGGTTGTTACAGTCTTCCTTGAGCTTTTCCAGAA
CGGAAGCCACCCGTTCCGGCTCGCTGTCCAGCTCTGCCCGGCAGAAGAAG
GTGAGCGGCAGGTTGCCGTAACCCAGGGCATCAGCAAAGGCCCGCCAGCT
GCTGATGTTCTCCATGAGTAAGGTCCGCACAGAGGCATAGATGTAGGTAA
GGAACTTGCAGGGCCGCAGGATCTGCTCCAGCAGCACTGAGGTGCTCAGC
TCGGGCCCCGAGAACAGGCTGGGCCGGGCCTTGCCGACGACCAGCACGTT
CTTGGTGTGCACCAAGCCCCCCTTGGCCTGGTAGTAGCCGATGTACCACT
CCTTGGTCCCCAGCTGTCCCTTGACCGGATGCGCTCCCTCCTGAGCACAG
CCCCACGTCCCCCTTTCTTGGACTCCCCCCAGGAAGTGACCCTTTGTTTG
CCCCACCCCCGCTTTTAAAACCTTGTCCATCTTTGAGCCAG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTGTACATGGCCCTAATTAGCTGAAT
GATATTTTCAATAAAATTAAAGTCAGAAATCAAATGGCAATTTTTAAAAA
TCAAGGTGGCTAACACAAGGGAGGTGGAAGATGCACTAACTCAATACTTA
GACACCGAGGAATAAGCGCATGGAAATATTAACGTCTTTGCCTTCTGTAG
CTAAAGCATTATGCTTCTGTGTGAGCAGAAAACTTTGTATATTCAGTAAA
AACATGGCACCTCACGGCATGTTCATACTCACCAATCTCGGCAGAGGCTC
TTCAGGCGTGCCGGCATGTGCAGGGCTAGGTGTGCATATTCAGAACCAAG
GCTTCTGTGAGGTCCTATGATGCACTGTGATGAGGCGGTCCAGAGACACC
CTGGATTCATTGTGTGCTTCATTTGGAAAAGGTCAGTGTATTTTCTGTTA
CTAGAAGAAAACATTTGAGACTATAACTGATTAAGAGCAGATGCCATTTG
CCTGATAATTCACGAAGCTGGAAAGCCTGAGAGATGGCGCTGGCATCCGC
TTATTATCAGGCAAGGACTTCTTGCTGTATCCCCATCCTGGCCCACCATT
ACTTGATGAGACTGGGGAAGTAATACCCACCCCCGCCTCCCTCCCCCTTC
CTTCAAAAGAGCGTATCTTAACCCCCCCTCTCTCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_h19.b1 MSMg01no429_h19.b1 CHROMAT_FILE:
MSMg01no429_h19.b1 PHD_FILE: MSMg01no429_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:59 2005
         (453 letters)



>mm_chr1_91041986_91042838
          Length = 853

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagaggatcggaactgtaacagaagagagaagagacacctttcttgggggtcccatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atagaggatcggaactgtaacagaagagagaagagacacctttcttgggggtcccatgac 594

                                                                       
Query: 61  atttccaacagcgtccctgtgactcagcccagtgtgacccatgcctgtctacctcaggaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 attcccaacagcgtccctgtgactcagcccagtgtgacccatgcctgtctacctcaggaa 534

                                                                       
Query: 121 gctcatccgagttttggacacctgctctagcactcaccatcaccagctccttctggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gctcatccgagttttggacacctgctctagcactcaccatcaccagctccttctggaagg 474

                                                                       
Query: 181 acttccggtccttgttgtcagggttgttacagtcttccttgagcttttccagaacggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acttccggtccttgttgtcagggttgttacagtcttccttgagcttttccagaacggaag 414

                                                                       
Query: 241 ccacccgttccggctcgctgtccagctctgcccggcagaagaaggtgagcggcaggttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccacccgttccggctcgctgtccagctctgcccggcagaagaaggtgagcggcaggttgc 354

                                                                       
Query: 301 cgtaacccagggcatcagcaaaggcccgccagctgctgatgttctccatgagtaaggtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cgtaacccagggcatcagcaaaggcccgccagctgctgatgttctccatgagtaaggtcc 294

                                                                       
Query: 361 gcacagaggcatagatgtaggtaaggaacttgcagggccgcaggatctgctccagcagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gcacagaggcatagatgtaggtaaggaacttgcagggccgcaggatctgctccagcagca 234

                                            
Query: 421 ctgaggtgctcagctcgggccccgagaacaggc 453
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ctgaggtgctcagctcgggccccgagaacaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)