BAC Information

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BAC

Clone NameMSMg01-429H22
Chromosome1 (Build37)
Map Location 116,645,817 - 116,717,139
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429H22.T7 (MSMg01no429_h22.b1)MSMg01-429H22.TJ (MSMg01no429_h22.g1)
ACCAG522209AG522210
length736740
length of high quality
(start - end)		493 (43 - 535)459 (71 - 529)
definitionCHROMAT_FILE: MSMg01no429_h22.b1 PHD_FILE: MSMg01no429_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:00 2005CHROMAT_FILE: MSMg01no429_h22.g1 PHD_FILE: MSMg01no429_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,716,766 - 116,717,139)(116,645,817 - 116,646,258)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTGTCTGCACATGAGCAAATGTATATAGGTAACAAATTCTAAAGAC
TTGAGCAGTTATGTTTGTTGGAGTTCACTAGCCACTTTTTCTGGCTCAGT
CTTTTATCTTTTTGATAACAACTATCCTAACAGGCATAAGGGGTTAATTT
AACTGGTTTACAGTTGAATTTCCCTTATATTTAGCATCTTTCCAAGTATA
CATTAGTTACTGGAATGTCTTCATTTCAGGAATGTCTATCTACATTCTTT
GCCTAAAAGGGGATATTTTCTTGCTACTGAGTTACTTGAGTCAGTGAGCA
TCCATTATATAAGTAAGACTGACTCGGCGAAACTAAAGCAACAGAAATAT
TTAAGTTTTAACTCAATATTATTCAATACAATTATTTGTTCCTCCCCCTT
TCCTGCTGATTGTCTGATCCAAGCAATGCAAAAAGAGCTCATTTCAATGC
AACGTTCCTTATACTCTTTGCTTTCATTTTAATGTAGTCTTCATATGTCA
TATGGAATATGGTTAAATGTGCTTATGTTCTTATTTGTTACTATAAGACA
AATGGAATCTTCTTAAAATACATAGATAGGTGCATAACTACTAATAATTT
GAGAATAGGCTGGGGAAATCTATATATATAAAAATATGGAAGAAATGGAA
AGAAGAAATAATACTAGTGGCCAACAGAAGGGGCAT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGTCAAGATTCCATTTGATTCACAAACTA
GACCTGCTTCTGCTTCTGATTCCTCTTCTTCTGAACTTCTTCTCCCTCCT
CCTCCTCCCCTCCTCCTCTTTTTCAAGGGAGCATGTCACAAAGGTAGACA
GGCAGATTGGTGAGGACTACGAATTGACTGTGATTGGATTGTATGATGTT
CAGTTTCCAAATGATCAGTAAAATGTAATAAAATATTATATTGGAATACA
GACTGATCATTTATCCCTTGAACATCACAGGCAATAGCCTTTAGGCTTCT
GTTGTTGTAAGATTCCACAGAAGAAATTAATATCATAAACTATTGACATA
AAAGACAAGGAATATATGACAAAAATGTAGGTATAACATTTGAAATTATT
TATTGTAATATTTTGGATGGACAAAACCTTTGTTCTAATTGATAATGGGA
TACATACACACGCGCGCGCGCGTGTGTGTGTGTGTGTGTCCTGTGCGCCC
CCTCNTCCCTTTCCNCTGTTTTTCCCTCCCCNTTTTCCTTCCCTCACTTT
TCCTCTTCTTTTTTTGCTCTTTCCTGGCCGTCGGTTCCCCCTTTCCTCCT
CCTTCTTTTTTTCTCTCCCCTTCCTTTTTTCCCCCCCTCCCTTTCTTTTC
TCCTTTTCCCTCCTTTTTCCCCTCTTCCCCTCCTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_h22.b1 MSMg01no429_h22.b1 CHROMAT_FILE:
MSMg01no429_h22.b1 PHD_FILE: MSMg01no429_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:00 2005
         (493 letters)



>mm_chr1_116716247_116717139
          Length = 893

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Minus

                                                                       
Query: 120 ttgataacaactatcctaacaggcataaggggttaatttaactggtttacagttgaattt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ttgataacaactatcctaacaggcataaggggttaatttaactggtttacagttgaattt 834

                                                                       
Query: 180 cccttatatttagcatctttccaagtatacattagttactggaatgtcttcatttcagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 cccttatatttagcatctttccaagtatacattagttactggaatgtcttcatttcagga 774

                                                                       
Query: 240 atgtctatctacattctttgcctaaaaggggatattttcttgctactgagttacttgagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 atgtctatctacattctttgcctaaaaggggatattttcttgctactgagttacttgagt 714

                                                                       
Query: 300 cagtgagcatccattatataagtaagactgactcggcgaaactaaagcaacagaaatatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cagtgagcatccattatataagtaagactgactcggcgaaactaaagcaacagaaatatt 654

                                                                       
Query: 360 taagttttaactcaatattattcaatacaattatttgttcctccccctttcctgctgatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 taagttttaactcaatattattcaatacaattatttgttcctccccctttcctgctgatt 594

                                                                       
Query: 420 gtctgatccaagcaatgcaaaaagagctcatttcaatgcaacgttccttatactctttgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gtctgatccaagcaatgcaaaaagagctcatttcaatgcaacgttccttatactctttgc 534

                         
Query: 480 tttcattttaatgt 493
           ||||||||||||||
Sbjct: 533 tttcattttaatgt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_h22.g1 MSMg01no429_h22.g1 CHROMAT_FILE:
MSMg01no429_h22.g1 PHD_FILE: MSMg01no429_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:00 2005
         (459 letters)



>mm_chr1_116645617_116646475
          Length = 859

 Score =  808 bits (418), Expect = 0.0
 Identities = 436/442 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaagattccatttgattcacaaactagacctgcttctgcttctgattcctcttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtcaagattccatttgattcacaaactagacctgcttctgcttctgattcctcttctt 260

                                                                       
Query: 61  ctgaacttcttctccctcctcctcctcccctcctcctctttttcaagggagcatgtcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaacttcttctccctcctcctcctcccctcctcctctttttcaagggagcatgtcaca 320

                                                                       
Query: 121 aaggtagacaggcagattggtgaggactacgaattgactgtgattggattgtatgatgtt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggtagacagccagattggtgaggactacgaattgactgtgattggattgtatgatgtt 380

                                                                       
Query: 181 cagtttccaaatgatcagtaaaatgtaataaaatattatattggaatacagactgatcat 240
           || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 381 caatttccaaatgatcagtaaaatgtaataaaatattatattggaacacagactgatcaa 440

                                                                       
Query: 241 ttatcccttgaacatcacaggcaatagcctttaggcttctgttgttgtaagattccacag 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ttatcccttgaacatcacaggcaatagcctttgggcttctgttgttgtaagattccacag 500

                                                                       
Query: 301 aagaaattaatatcataaactattgacataaaagacaaggaatatatgacaaaaatgtag 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaattaatatcataaagtattgacataaaagacaaggaatatatgacaaaaatgtag 560

                                                                       
Query: 361 gtataacatttgaaattatttattgtaatattttggatggacaaaacctttgttctaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtataacatttgaaattatttattgtaatattttggatggacaaaacctttgttctaatt 620

                                 
Query: 421 gataatgggatacatacacacg 442
           ||||||||||||||||||||||
Sbjct: 621 gataatgggatacatacacacg 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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