BAC Information

Click to search

BAC

Clone NameMSMg01-429I21
Chromosome1 (Build37)
Map Location 102,140,418 - 102,140,839
singlet/doubletsinglet
Overlap geneC230078M14Rik
Upstream geneLOC633295, EG666200
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429I21.T7 (MSMg01no429_i21.b1)MSMg01-429I21.TJ (MSMg01no429_i21.g1)
ACCAG522255AG522256
length724722
length of high quality
(start - end)
424 (61 - 484)422 (169 - 590)
definitionCHROMAT_FILE: MSMg01no429_i21.b1 PHD_FILE: MSMg01no429_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:05 2005CHROMAT_FILE: MSMg01no429_i21.g1 PHD_FILE: MSMg01no429_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTG
ACATGTTACAGTGTACCTTGGAATTATATGCCAATAAACTCCTTTGTCCC
CCAAGTTGCTTTTAGTTAGTGTATTTTATCAGAATGAAAGATACTAGAAT
ATCTTGTGTAGTTTCAGAGTGGTTTTTTCACCCTGCACACTTACATTCTT
TTCAACCTCAGCTCCAATGAGTACTTTCTGTAAACTCAGCTCTTATTTTT
GTTAGTTGCTATTTTTTCTGCATTACCTGACCACACAGCATATTATATTA
CATGGTATTATATGTCTATTTGTTTGAGAATATAAAGCCTGGCTTCTCAT
TTTTAAGGTCATTACCATTAGGCTGTATCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATAT
ATATATATATATATATATACACACACACACACACACATATACATATGATA
CACGTACCCATATACACACATATATGCATACACTCCTGCATATATTATCC
ATACCCACCTACATATAGCGCTTCAATACTTGGCTATATCTACATTCGAA
CTTGGAGCCTATATTGGCACTTTTAATTTTACCTGTACACCCTCGACCGT
CACTATTGCTTCCCCTTTTCCCGGGTGTAAACCCCTACCCACTTTATTGC
TTCTTTTTCTCCCTCTTTCCTTCN
CTGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCAGGTGCATCTGTGCCCAGGATTGGAGCAT
GTGCTGCAGCCTTCCGCAACCCACCCATTCACAGAGTTAGCTTGACAACC
AGGATGTCTGACGCAGCCTGAATCATAGGCTCAGAGGAGGGATAGCCTCC
AGAGAGTGACAGAAAGGCCAATTAACATCAGAGATAACCAGATGGCAAGA
GGCAAGAGCAAAAACATAAGCAACAGAAGTCAAATTCCAATTGGCAGCAT
CAAAACCCAGTTCTCCTACCGCAACAAGCTCTGCATACCCCAATACACCT
GAAAAAAAACATGATTCAGATCAAAAATCCCATTCATGAAGAAGATAGAG
GACATTAAGAAGGATATAAATAACTCCCATAGAGAAATACTGAAGAACAG
AGGTAAATACATAGAAGCCTTTAAAGAGGAAACACATAAATCCCTTAAAG
AAATACAGGAAAACAAAACCAAACAGGTAAAGGAATTGAATAAAACCATC
CAGTATCTAAAAATGCAAATAGAATCAATAAAGAAACCCAAAAGGGCCAC
CACCCTAGAGATAGAAAACCTAGGAGGAAAGGGATCAGGAGTCATAGATG
CAAGCATCACCTTTAGAATGCCCGAGATAGAAGAATCTCTATGCTAGAAC
CTACCATAGAAGACATTGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_i21.b1 MSMg01no429_i21.b1 CHROMAT_FILE:
MSMg01no429_i21.b1 PHD_FILE: MSMg01no429_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:05 2005
         (424 letters)



>mm_chr1_102140218_102141041
          Length = 824

 Score =  754 bits (390), Expect = 0.0
 Identities = 415/426 (97%), Gaps = 6/426 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtaccttggaattatatgccaataaactcctttgtcccccaagttgcttttagttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtaccttggaattatatgccaataaactcctttgtcccccaagttgcttttagttagt 260

                                                                       
Query: 61  gtattttatcagaatgaaagatactagaatatcttgtgtagtttcagagtggttttttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtattttatcagaatgaaagatactagaatatcttgtgtagtttcagagtggttttttca 320

                                                                       
Query: 121 ccctgcacacttacattcttttcaacctcagctccaatgagtactttctgtaaactcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgcacacttacattcttttcaacctcagctccaatgagtactttctgtaaactcagc 380

                                                                       
Query: 181 tcttatttttgttagttgctattttttctgcattacctgaccacacagcatattatatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttatttttgttagttgctattttttctgcattacctgaccacacagcatattatatta 440

                                                                       
Query: 241 catggtattatatgtctatttgtttgagaatataaagcctggcttctcatttttaaggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggtattatatgtctatttgtttgagaatataaagcctggcttctcatttttaaggtc 500

                                                                       
Query: 301 attaccattaggctgtatctctctctctctctctctctctctctctctctctctctctat 360
           ||||||||||||||||| |||||||||||||||||||||||||||| | | | |    ||
Sbjct: 501 attaccattaggctgtaactctctctctctctctctctctctctctatatatat----at 556

                                                                       
Query: 361 atatatatatatatatatatatata--tatatatatatatatatatatatacacacacac 418
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 557 atatatatatatatatatatatatacatatatatatatatatatatatatacacacacac 616

                 
Query: 419 acacac 424
           ||||||
Sbjct: 617 acacac 622



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 358 tatatatatatatatatatatatatatatatatatatatatatatatatata 409
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 597 tatatatatatatatgtatatatatatatatatatatatatatatatatata 546



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 358 tatatatatatatatatatatatatatatatatatatatatatatatatata 409
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 599 tatatatatatatatatgtatatatatatatatatatatatatatatatata 548



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 358 tatatatatatatatatatatatatatatatatatatatatatatatatata 409
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 601 tatatatatatatatatatgtatatatatatatatatatatatatatatata 550



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 358 tatatatatatatatatatatatatatatatatatatatatatatatatata 409
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 603 tatatatatatatatatatatgtatatatatatatatatatatatatatata 552



 Score = 93.5 bits (48), Expect = 2e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 358 tatatatatatatatatatatatatatatatatatatatatatatatatata 409
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 605 tatatatatatatatatatatatgtatatatatatatatatatatatatata 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 218
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 11
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)