BAC Information

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BAC

Clone NameMSMg01-429I22
Chromosome1 (Build37)
Map Location 102,140,400 - 102,140,859
singlet/doubletsinglet
Overlap geneC230078M14Rik
Upstream geneLOC633295, EG666200
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429I22.T7 (MSMg01no429_i22.b1)MSMg01-429I22.TJ (MSMg01no429_i22.g1)
ACCAG522257AG522258
length738758
length of high quality
(start - end)
469 (38 - 506)417 (70 - 486)
definitionCHROMAT_FILE: MSMg01no429_i22.b1 PHD_FILE: MSMg01no429_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:05 2005CHROMAT_FILE: MSMg01no429_i22.g1 PHD_FILE: MSMg01no429_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGA
CATGATAGAGTGTACCTTGGAATTATATGCCAATAAACTCCTTTGTCCCC
CAAGTTGCTTTTAGTTAGTGTATTTTATCAGAATGAAAGATACTAGAATA
TCTTGTGTAGTTTCAGAGTGGTTTTTTCACCCTGCACACTTACATTCTTT
TCAACCTCAGCTCCAATGAGTACTTTCTGTAAACTCAGCTCTTATTTTTG
TTAGTTGCTATTTTTTCTGCATTACCTGACCACACAGCATATTATATTAC
ATGGTATTATATGTCTATTTGTTTGAGAATATAAAGCCTGGCTTCTCATT
TTTAAGGTCATTACCATTAGGCTGTATCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATA
TATATATATATATATATACACACACACACACACACATATACATATATACA
CATACGCATATACACACATATATGTACACTCCCATGCATATATACACATA
CATACATATATATAGTGTTACCATATCTGCGAATAGGTATAGTTGAACTT
GCACCCAATATTGGTACTTTTATTTTTCTTTGGATTCCCCCTGCCTGGGA
TGAAGCCCTTTTCCTTTACCCTGATGGAACAATTTTTTTTCCCCTGGCCC
CTGATGTCCTGCAACCCTTCGACCCTAAACACCTTTCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTCAGGTGCATCTGTGCCCAGGATTGGAGC
ATGTGCTGCAGCCTTCCGCAACCCACCCATTCACAGAGTTAGCTTGACAA
CCAGGATGTCTGACACAGCCTGAATCATAGGCTCAGAGGAGGGATAGCCT
CCAGAGAGTGACAGAAAGGCCAATTAACATCAGAGATAACCAGATGGCAA
GAGGCAAGAGCAAAAACATAAGCAACAGAAGTCAAATTCCAATTGGCAGC
ATCAAAACCCAGTTCTCCTACCGCAACAAGCTCTGCATACCCCAATACAC
CTGAAAAAAAACATGATTCAGATCAAAAATCCCATTCATGAAGAAGATAG
AGGACATTAAGAAGGATATAAATAACTCCCATAGAGAAATACTGAAGAAC
AGAGGTAAATACATAGAAGCCTTTAAAGAGGAAACACATAAATCCCTTAA
AGAAATACAGGAGAAACAAACCAAACAGGGTAAAAGGGAAATTTGGAATA
AAAAACCCTCTCCTGTGTTTTTTCTTCACCAAAAGGTGGGGGGTTTAAAA
AATAAAAATACNCCNNNACAAAAAAGAGTTNTAAAAAGAGGCGNNNNTTT
TCTCTTCTACCCTTCCCCCACCTTTTTTTCTACTTCATTTTCCACTCTTC
TCCCTCCCCCCCCCTTTTTCCCCTTTCTCACCCCTCTCCCTTTCCTCCCC
CCCCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_i22.b1 MSMg01no429_i22.b1 CHROMAT_FILE:
MSMg01no429_i22.b1 PHD_FILE: MSMg01no429_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:05 2005
         (469 letters)



>mm_chr1_102140196_102141064
          Length = 869

 Score =  824 bits (426), Expect = 0.0
 Identities = 453/466 (97%), Gaps = 8/466 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgacatgatagagtgtaccttggaattatatgccaataaactcctttgtccccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgacatgatagagtgtaccttggaattatatgccaataaactcctttgtccccc 264

                                                                       
Query: 65  aagttgcttttagttagtgtattttatcagaatgaaagatactagaatatcttgtgtagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagttgcttttagttagtgtattttatcagaatgaaagatactagaatatcttgtgtagt 324

                                                                       
Query: 125 ttcagagtggttttttcaccctgcacacttacattcttttcaacctcagctccaatgagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcagagtggttttttcaccctgcacacttacattcttttcaacctcagctccaatgagt 384

                                                                       
Query: 185 actttctgtaaactcagctcttatttttgttagttgctattttttctgcattacctgacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actttctgtaaactcagctcttatttttgttagttgctattttttctgcattacctgacc 444

                                                                       
Query: 245 acacagcatattatattacatggtattatatgtctatttgtttgagaatataaagcctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acacagcatattatattacatggtattatatgtctatttgtttgagaatataaagcctgg 504

                                                                       
Query: 305 cttctcatttttaaggtcattaccattaggctgtatctctctctctctctctctctctct 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 cttctcatttttaaggtcattaccattaggctgtaactctctctctctctctctctctct 564

                                                                       
Query: 365 ctctctctctctctctatatatatatatatatatatatatatata--tatatatatatat 422
           |||| | | |      |||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 565 ctctatatat------atatatatatatatatatatatatatatacatatatatatatat 618

                                                         
Query: 423 atatatatacacacacacacacacacatatacatatatacacatac 468
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 atatatatatacacacacacacacacatatacatatatacacatac 664



 Score = 93.5 bits (48), Expect = 3e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 380 tatatatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 tatatatatatatatgtatatatatatatatatatatatatatatatatata 568



 Score = 93.5 bits (48), Expect = 3e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 380 tatatatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatatatatatatatgtatatatatatatatatatatatatatatatata 570



 Score = 93.5 bits (48), Expect = 3e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 380 tatatatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 623 tatatatatatatatatatgtatatatatatatatatatatatatatatata 572



 Score = 93.5 bits (48), Expect = 3e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 380 tatatatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 625 tatatatatatatatatatatgtatatatatatatatatatatatatatata 574



 Score = 93.5 bits (48), Expect = 3e-23
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                               
Query: 380 tatatatatatatatatatatatatatatatatatatatatatatatatata 431
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 627 tatatatatatatatatatatatgtatatatatatatatatatatatatata 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 222
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 11
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)