XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCAG
TTTGTAGAATGTGTCACCTACCAAGTCGACAGAACCAGTGCCAAGAGTTG
GGCAGGAATATGGGTGGACACAATTCTTCTGGCCCCTGAGCCCATGTAAG
CATGCACAGACAGGCCAAAAATAATGCACTGGCTAGTGTAATTCTTACTC
CTCGCTCACCCGCGGTCGCTCAGAAACTCTGTGGGTGGAGCATGGCAAAT
CTGCCCCCTGCTTGAGCCCAATGGTTAGTACCTAAGATGCTTGTGACCAG
ATTTCTGTCTCCATTACAGTCATCACAAAAGGCAAACGAGGAGTTGTTAA
CAAGTACCTTTTCAGGACTACTCTTCTCAGACACTTCTTGCTAGCAGGCT
GTTTGGAGAGGTTCCCAAAGTTTTGGAGAGCTAATGCTATATTTGCTGGA
CAGGGCTGATGCGCCAGACGTTGAGCCACAATGTCATGATCCCTTTAGAA
ATTGTTAAGTTACCTCCAATAAAAGCATGGTGGGATGGTTTGGTGGGCTG
ATTTGGTTTGTACTCACCCAACTTGGCAACACAGTGATGTGATCTGCCTT
TTTAAAAGCACAGCCTTGGGCTGCTGGGCTACCTAATATCATAAAGATCT
CTGGATCAGCCCGCTTGATTCCCAGAGAGCCAGCCCAGGAGCTATGCTCT
ATCCCGCACCAGGTCATTGTTCACACTGGCAATTATCGATGTG

TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTAAAGTAGAATAAATTGTTAG
AAGTGCTCCCCTGGGTGTCCATTAGAGCTTTATGGCAGATTTAAGGAGTT
AGAATGTCTCACGGCAGACCCAGGAGGCTTGAGTATCTCTTTGATCAATT
ATTGTGCTTCCATTAAAATATTTTTACTTCACTGTGGGACATCTTGATCG
CCCTGCATATTGGTAGAACTGTCAGATCATCTAAGCTTTTGATTTTAAAG
GTTATTGCCTCGTAGTGCCAATGTGTCCTATGTTTAAGAATTGAACATGC
CATGGATACAAATCTTTCATGCTGGATACAATTGGCTTCTCTATGCAGTG
AAAGATGCTCCACAAAATATCCAGCGAAATCTGTGCACTGCTTCTCAACA
ATTTTGATGATAAAGTGACATACACAGTGTCTTTGATGATTGTGCTATGC
CAGTAGCTTTATAAAAAACTAAATGGTATAGATATCTACTGTGTTTCTCT
ATATGATTTAGTAGTATTTCTTTGTATTCAACGTTGATGCAAAGGGCATT
ATTGGCAAATGGATATTCACTACCACAACCTTTTGTTCTACAAACATTTA
CTGTGAACGCTAAACCTATTCTTTAAGAACCTGCCGGACCACTTACTACC
CACTCTCN

Query= MSMg01no429_l02.b1 MSMg01no429_l02.b1 CHROMAT_FILE:
MSMg01no429_l02.b1 PHD_FILE: MSMg01no429_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:15 2005
         (609 letters)



>mm_chr1_81518115_81519123
          Length = 1009

 Score =  555 bits (287), Expect = e-162
 Identities = 308/315 (97%)
 Strand = Plus / Minus

                                                                       
Query: 293 aaaaggcaaacgaggagttgttaacaagtaccttttcaggactactcttctcagacactt 352
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaaaggcaaacgagcagttgttaacaagtaccttttcaggactactcttctcagacactt 748

                                                                       
Query: 353 cttgctagcaggctgtttggagaggttcccaaagttttggagagctaatgctatatttgc 412
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 747 cttgctagcaggctgtttggagaggctcccaaagttttggagagctagtgctatatttgc 688

                                                                       
Query: 413 tggacagggctgatgcgccagacgttgagccacaatgtcatgatccctttagaaattgtt 472
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 687 tggacagggctgatgcgccagaccttgagccacaatgtcatgatccctttagaaattgtt 628

                                                                       
Query: 473 aagttacctccaataaaagcatggtgggatggtttggtgggctgatttggtttgtactca 532
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 627 aagttacttccaataaaagcatggtgggctggtttggtgggctgatttggtttgtactca 568

                                                                       
Query: 533 cccaacttggcaacacagtgatgtgatctgcctttttaaaagcacagccttgggctgctg 592
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 567 cccaacttggcaacacagtgatgtgagctgcctttttaaaagcacagccttgggctgctg 508

                          
Query: 593 ggctacctaatatca 607
           |||||||||||||||
Sbjct: 507 ggctacctaatatca 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_l02.g1 MSMg01no429_l02.g1 CHROMAT_FILE:
MSMg01no429_l02.g1 PHD_FILE: MSMg01no429_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:15 2005
         (480 letters)



>mm_chr1_81435161_81436040
          Length = 880

 Score =  920 bits (476), Expect = 0.0
 Identities = 479/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttaaagtagaataaattgttagaagtgctcccctgggtgtccattagagctttatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttaaagtagaataaattgttagaagtgctcccctgggtgtccattagagctttatggc 260

                                                                       
Query: 61  agatttaaggagttagaatgtctcacggcagacccaggaggcttgagtatctctttgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatttaaggagttagaatgtctcacggcagacccaggaggcttgagtatctctttgatc 320

                                                                       
Query: 121 aattattgtgcttccattaaaatatttttacttcactgtgggacatcttgatcgccctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattattgtgcttccattaaaatatttttacttcactgtgggacatcttgatcgccctgc 380

                                                                       
Query: 181 atattggtagaactgtcagatcatctaagcttttgattttaaaggttattgcctcgtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattggtagaactgtcagatcatctaagcttttgattttaaaggttattgcctcgtagt 440

                                                                       
Query: 241 gccaatgtgtcctatgtttaagaattgaacatgccatggatacaaatctttcatgctgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaatgtgtcctatgtttaagaattgaacatgccatggatacaaatctttcatgctgga 500

                                                                       
Query: 301 tacaattggcttctctatgcagtgaaagatgctccacaaaatatccagcgaaatctgtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaattggcttctctatgcagtgaaagatgctccacaaaatatccagcgaaatctgtgc 560

                                                                       
Query: 361 actgcttctcaacaattttgatgataaagtgacatacacagtgtctttgatgattgtgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgcttctcaacaattttgatgataaagtgacatacacagtgtctttgatgattgtgct 620

                                                                       
Query: 421 atgccagtagctttataaaaaactaaatggtatagatatctactgtgtttctctatatga 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 atgccagtagctttataaaaaactaaatggtatagatatctactgtgtctctctatatga 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)