BAC Information

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BAC

Clone NameMSMg01-429N08
Chromosome1 (Build37)
Map Location 48,611,223 - 48,611,602
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666869, LOC546734, LOC674566
Downstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429N08.T7 (MSMg01no429_n08.b1)MSMg01-429N08.TJ (MSMg01no429_n08.g1)
ACCAG522469AG522470
length728728
length of high quality
(start - end)
234 (78 - 311)380 (73 - 452)
definitionCHROMAT_FILE: MSMg01no429_n08.b1 PHD_FILE: MSMg01no429_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:26 2005CHROMAT_FILE: MSMg01no429_n08.g1 PHD_FILE: MSMg01no429_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGACACGAGCCGCGGAATTC
TCTATTTGCTACACAACTTTTGNTGNGCAAACTTTGTTTCTTAATTTAGA
ACTATTAGACAAGTTAAAATGGCAGCAGCCAGCATTGAAGAAAAAGGAAG
AATGAGGAGGAGAGAGGAGAAGGCATTATGAGAGGATATATGCCATGACC
ACATACATGGCCAGAAGAAACAGTGATTGTTTGAGGGACTCCATGGGGAA
GTAGCCAGGTCAGCAGTTAGAGAAGTAGATTAGGGGTTACCCTTAGTAAC
TGTCAAAGACATTTTTTAAAACCAGAGTCCAAGTTTAATTTATTTGTAAA
CTAGTGGGGATAAACTTAAATAGGTTTGTATTACACATTGACGACTTGAG
GCAAGAACTTACTTGTGGGGCAGTGAGGCATGTACAGACAGGTCTGGAAC
CAGTTACCTGGTGGGTGATGACTTCCACACCTCCTGGGCCCCCTGGTTCC
TGTCACAGCTACAGCCTCCCACAGCCCCCTGCAGAGAAGTGTGTGTCCAT
CAGTCACTTAGGCAATGCCACAAGCTCTTGGCATTCTGTCTGAACTCCAC
CCCAACAGTTACCTGGCAACACCCAGGTTTGCCCTGCCCCATAGTTACCT
GGCCACCGCCAGGCAGTTCTAGCCCTCCTATACAAGGAGCTTCTTGGCCC
CTCCTCTCCCTTACTCTCTTACCTCCTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATCTTCTAAAGAGATATATAGCACTATC
ACAATTTCTGAGAAAAAACTTCATATTTTCTTATTCTGCAATTATGTTAT
TTTGTATCTTTCTTAGGATAACCCTCTAAACAAACTAAGTTGTTATTTCT
AATACATCATAGGGAATGAACTGAAACTCCTTATTAGAATAAATTATTTC
TGTTTGTGCTATAGTGATTTTTTCTTGTGAAATCAATAAAAATTATATTC
AAAATGGAATAGGATTTTTATTGCATTTCATAAAGGGACATCATTTATGT
TAGACACTATTGTGGATAAATTCAATCATTTCTATAACTCAACTTTTACT
TATAAGAGTGACAATTGCAGATTGTTCTACAGATTAAATATTGCTAGCAA
CCAACAGAGTTTACAATATCATTCTATATATTCAGTTGCATCCCAGTATA
TATGAGTTATATATTCCAAACCGCATAGACCCATCCTTCCACATTTACGA
TCGCCCTAATATCCGCGTTTCATTGCAACTTTTCCTTTTGCCTATAACTG
GCACTTTAGTCCCACAGTGGACCGACCTTTACCGGCCTCTAATCGCAAAT
TTCTTTGGATTCGAATTATCCCCCCTCCCTTTTTTTCATCTTTTCGCAAC
CATTTTTCTCCTTTCACCACTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_n08.g1 MSMg01no429_n08.g1 CHROMAT_FILE:
MSMg01no429_n08.g1 PHD_FILE: MSMg01no429_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:26 2005
         (380 letters)



>mm_chr1_48611023_48611802
          Length = 780

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttctaaagagatatatagcactatcacaatttctgagaaaaaacttcatattttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttctaaagagatatatagcactatcacaatttctgagaaaaaacttcatattttctt 260

                                                                       
Query: 61  attctgcaattatgttattttgtatctttcttaggataaccctctaaacaaactaagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctgcaattatgttattttgtatctttcttaggataaccctctaaacaaactaagttg 320

                                                                       
Query: 121 ttatttctaatacatcatagggaatgaactgaaactccttattagaataaattatttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttctaatacatcatagggaatgaactgaaactccttattagaataaattatttctg 380

                                                                       
Query: 181 tttgtgctatagtgattttttcttgtgaaatcaataaaaattatattcaaaatggaatag 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tttgtgctatagtgattttttcttgtgaaatcaataaaaattatattccaaatggaatag 440

                                                                       
Query: 241 gatttttattgcatttcataaagggacatcatttatgttagacactattgtggataaatt 300
           |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 441 gattttgattgcatttcataaagggacatcatttatgttaggcacaattgtggataaatt 500

                                                                       
Query: 301 caatcatttctataactcaacttttacttataagagtgacaattgcagattgttctacag 360
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 caatcatttctacaactcaacttttacttataagagtgacaattggagattgttctacag 560

                               
Query: 361 attaaatattgctagcaacc 380
           ||||||||||||||||||||
Sbjct: 561 attaaatattgctagcaacc 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)