BAC Information

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BAC

Clone NameMSMg01-429O10
Chromosome1 (Build37)
Map Location 90,195,555 - 90,196,110
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429O10.T7 (MSMg01no429_o10.b1)MSMg01-429O10.TJ (MSMg01no429_o10.g1)
ACCAG522521AG522522
length736721
length of high quality
(start - end)
546 (62 - 607)432 (76 - 507)
definitionCHROMAT_FILE: MSMg01no429_o10.b1 PHD_FILE: MSMg01no429_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:31 2005CHROMAT_FILE: MSMg01no429_o10.g1 PHD_FILE: MSMg01no429_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGAGTCCGCGGAATTCATG
GATCTCCGGGAGATGGCTCAGTTGGTAAAGTGCTTGCTGAGCAAGCATGA
AGACTTGAGTTCAATCCCTGCCACCCATCTAAAAATCCAGAACTCACAAT
CCCAGAGCTGGGGAGGCAGAGACAGGAAGGATCCTGGGACTCTTTCTCCA
GTCAGCTTAACCTAACCAGGAGGCTCCAGGTGTCAAAAAACCAAACCAAA
AAACCAAGCAAGCAAAACCCAGTAAGGACAGCTGACCTCTGCCCTACACA
AATGCTCACTCTCTCATGCAGATGTACATACTGATATACATTATATATAA
CTTACACATACTTAATAATAAAATCTATCTGAATTTTTGGATGAGATGTC
TCACCCAAAGAGACCGGTATCTTAAAACTGGTATCTACTCCTCACTAATA
TAACTTGATTTTGCTGTGCAGGCTTCCTTGTGTGGAAGCTTGCAGCCCCT
AGCTCAGCCCTTAGAGCAGCTAGTGCCTGAGTCGGGGCAAGGCTACAGGG
GCTAGCATACTATGACAGCATTTCATTCCCTCTCTTGTTGGAAAATGTCT
TTCCCATCAGGTTACTTTTGGGGCAAATATTTAATTCCCATCTGCAATGG
CCTGGCTATTTTCATCTCTGACATTCGAACCCTTCTGCCCTCGGNGCCCC
CTGTGGNATGGGAATGCTACCAATGACCCTAATTGG
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGTAGACTCCAGAGAACCAA
ATAACCCTATTAAAAATGGGGTACAGTGGAAAACAAGGAAATCTCAACTG
AAGGATACAGAATGGCTGAGAAGCACCGAGTTCAGCATTCTTAGTCATCA
GGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTAACACCATTCAGA
ATAGCTAAGATTAAAAACTCAGGTGACATCAGATGCTGGCTAGGATGTGG
AGAAAGAGGAATACTCCTACATTGTTGATGGGATCGCAAGATGGTACAGC
CAATCTAGAAATCAGTTTGGCAGTTCCTCAGAAAATTGCACATAGCACTA
CTTGAGGACGCAGCAATGCCACTGCCTGGCATATACCCAGAAGCTGCTCC
AACATGTAACAAGTACACATGCTGCCTTATGTAATAGCAGCCTTATTTAT
AATAGCCAGAAGCTTGAAAGAACCTAGATGTCCTTTAACAGAGATACAGG
ATATGCGCTACATTTTTCCCAGGAAGTATTACTCTTCTATCACCACCAAT
GAATTCCTGACATTCCTTTGCAAAAGGGTGGAACCTAGACAAATCCTGAG
TGGAGGCTATTCCACCTCCAATGCTCCCACCCGGTATGCCGCCCCCCGAC
ATCGCGTTCCCCCCCCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_o10.b1 MSMg01no429_o10.b1 CHROMAT_FILE:
MSMg01no429_o10.b1 PHD_FILE: MSMg01no429_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:31 2005
         (546 letters)



>mm_chr1_90195365_90196310
          Length = 946

 Score =  948 bits (490), Expect = 0.0
 Identities = 535/556 (96%), Gaps = 10/556 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggctcagttggtaaagtgcttgctgagcaagcatgaagacttgagttcaatccctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gatggctcagttggtaaagtgcttgctgagcaagcatgaagacttgagttcaatccctgc 250

                                                                       
Query: 61  cacccatctaaaaatccagaactcacaatcccagagctggggaggcagagacaggaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 251 cacccatctaaaaatccagaactcacaatcccagagctggggaggcagagacagggagga 310

                                                                       
Query: 121 tcctgggactctttctccagtcagcttaacctaaccaggaggctccaggtgtcaaaaaac 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcctgagactctttctccagtcagcttaacctaaccaggaggctccaggtgtcaaaaaac 370

                                                                       
Query: 181 caaaccaaa----------aaaccaagcaagcaaaacccagtaaggacagctgacctctg 230
           |||||||||          ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 371 caaaccaaaccaaaccaaaaaaccaagcaagcaaaaaccagtaaggacagctgacctctg 430

                                                                       
Query: 231 ccctacacaaatgctcactctctcatgcagatgtacatactgatatacattatatataac 290
           |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccctacacaaatgctcacacacacatgcagatgtacatactgatatacattatatataac 490

                                                                       
Query: 291 ttacacatacttaataataaaatctatctgaatttttggatgagatgtctcacccaaaga 350
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctatacatacttaataataaaatctatctgaatttttggatgagatgtctcacccaaaga 550

                                                                       
Query: 351 gaccggtatcttaaaactggtatctactcctcactaatataacttgattttgctgtgcag 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaccggtatcttaaaactggtatctactcctcactaatataacttgattttgctgtgcag 610

                                                                       
Query: 411 gcttccttgtgtggaagcttgcagcccctagctcagcccttagagcagctagtgcctgag 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcttccttgtgtggaagcttgcagcccctagctcagcccttagagcagctagtgcctgag 670

                                                                       
Query: 471 tcggggcaaggctacaggggctagcatactatgacagcatttcattccctctcttgttgg 530
           ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||
Sbjct: 671 tcggggcaaggctacaggggctagcatactatgacagcatcccatcccctctcttgttgg 730

                           
Query: 531 aaaatgtctttcccat 546
           ||||||||||||||||
Sbjct: 731 aaaatgtctttcccat 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)