BAC Information

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BAC

Clone NameMSMg01-430D07
Chromosome1 (Build37)
Map Location 159,379,649 - 159,517,402
singlet/doubletdoublet
Overlap geneBC026585, Lztr2
Upstream geneSoat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik
Downstream geneLOC664935, LOC100039217, 6430517E21Rik, Astn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430D07.T7 (MSMg01no430_d07.b1)MSMg01-430D07.TJ (MSMg01no430_d07.g1)
ACCAG522754AG522755
length831814
length of high quality
(start - end)		204 (49 - 252)307 (83 - 389)
definitionCHROMAT_FILE: MSMg01no430_d07.b1 PHD_FILE: MSMg01no430_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:56 2005CHROMAT_FILE: MSMg01no430_d07.g1 PHD_FILE: MSMg01no430_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,517,222 - 159,517,402)(159,379,649 - 159,379,955)
sequence
TTTTTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXCTACTCCGAGAGGAT
CCGCGGAATTCAGAAATTTTCGGGGCTGTTGACACTGGAATATGGGAGAA
GACGTTGAATTAATCAGGTGTTAAACCAGAAATCTTTGTTTGCAGAAAAG
CCCCTCTGCCTGAGCCTGTTGGGAAGTAGTGGAAGGTGTTCCTCATAGAA
TTGTGGGGCAGTGGATATGGCTGAAAACATCCATTTAAAAATGTTTAAAA
GACACTATCAGGAAGATACCCGGCACTTTCAGTTCAGAATGACCACTGGT
CTCATGGCCATAAATATAGCATAAGATTTTATTGAACTGACCCTTGGCTG
CCTAAGTACACCTGAAAGGAGAGTCCAGGTGAGTTAGGAAGAATTTTTCG
CCTCCGATGAACCTAGTAAGAGCTTTCTATCTCTGCTGGCAAAGTCCTTT
CATTTTTATTTGTACCACTACTGTCTTCTTTTTTTTTAATTTTCCTTTCA
TTCCCTTCCTTATCCACCGCCTATCTCCACCTTGTCCCATCCTTATTTTA
CGCATTCTTATGAACCTTCTCCTTTTAATTTCCTCTCTTACCCCTCTTAA
CCCTTCCTTTAGCTTTTTCTTATTTTATTCCGCCTATCTTTTTCTTCTAC
TCGAACCCTATATACCTCCACATTACCTAATCCTCCCCTTCTATCGTTCC
TTTTTTATTTTTCCCCTTCTTATTCTTGTCTATCTCTCTCTTTTTCTCCC
TTTCTCTTTTCCTCTTCCGATCCCTACTTATTCCATCTCCCCCCTTATTT
TTATATCACTCCATCTCTTTATTCCAACTTC

CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGAGGGAAAGGGAGAA
ACAGACAGGTGTGCAGTGTCTGAAAGCACTGGGTAGTAGAGGAGACTCAG
AAAACAACGACGGGACCAGGAGGAGAATGAGCAGAGGGCTGGCTTCAGAA
GCTGCAATGAGCCAGCCATGTTAGAGACTGACAAGAGCCTGTGAGACCCG
GCAAACAGGTCACTGGGGACAGCTCGAACAGTCTTACTGCACTGGGCGTT
GGTGCACAGTTGAGACAGTGAAGGAAGGGAAGCTTAGTGGAGTCGGCTGT
GAGGAGCTGGCTGTGATTCGCAGGGAGGGGTAAGGAATGAAGCCCCCCTT
GATTCCCTCTTTCGTGCTTGATTTCCCTCCTTTCTTTATTCCTCTTAGTC
TATTGCCCTTTTTCTCTTCTCCTTTCTTATCCCTTTTTTCCCCTTTCTTT
CTTGTTCCTCCTTCTCTTTTTTTCTCTTTTTTTCTCCTCTTCTCTTCTTC
TTCTTCTCTCTTCCTCCTTTTTTTCCCCCCCTTCTTCCTTTCCTTTTCCC
CCCTCCTTTTCTCCTTGTTTCCTGTCCCTTTCGCTCTTGTCTTCATCCTA
TTGTTCTTCTATTTTCCCTCCTCCTCCTTCCTTTTCTTCCACTTTTTCCC
TTTCTTTTTTCGCTTTCTTCCTCATATTTTCTCTCCTTTAGTACGTCCGT
CTTCCTCTTCCTTTTTCCGTTTTCTTCCTCCCTTACTCTCCGTTTTCTCT
TCCGTTTAACACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_d07.b1 MSMg01no430_d07.b1 CHROMAT_FILE:
MSMg01no430_d07.b1 PHD_FILE: MSMg01no430_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:56 2005
         (204 letters)



>mm_chr1_159516999_159517602
          Length = 604

 Score =  342 bits (177), Expect = 7e-99
 Identities = 180/181 (99%)
 Strand = Plus / Minus

                                                                       
Query: 24  ggggctgttgacactggaatatgggagaagacgttgaattaatcaggtgttaaaccagaa 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggggctgttgacactggaatatgggagaagacgttgaattaatcaggtgttaaaccagaa 345

                                                                       
Query: 84  atctttgtttgcagaaaagcccctctgcctgagcctgttgggaagtagtggaaggtgttc 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atctttgtttgcagaaaagcccctctgcctgagcctgttgggaagtagtggaaggtgttc 285

                                                                       
Query: 144 ctcatagaattgtggggcagtggatatggctgaaaacatccatttaaaaatgtttaaaag 203
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 284 ctcatagaattgtggggcagtggatatggctgaaaacatccatttaaaaaagtttaaaag 225

            
Query: 204 a 204
           |
Sbjct: 224 a 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no430_d07.g1 MSMg01no430_d07.g1 CHROMAT_FILE:
MSMg01no430_d07.g1 PHD_FILE: MSMg01no430_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:56 2005
         (307 letters)



>mm_chr1_159379449_159380155
          Length = 707

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccgagggaaagggagaaacagacaggtgtgcagtgtctgaaagcactgggtagtagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccgagggaaagggagaaacagacaggtgtgcagtgtctgaaagcactgggtagtagagg 260

                                                                       
Query: 61  agactcagaaaacaacgacgggaccaggaggagaatgagcagagggctggcttcagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactcagaaaacaacgacgggaccaggaggagaatgagcagagggctggcttcagaagc 320

                                                                       
Query: 121 tgcaatgagccagccatgttagagactgacaagagcctgtgagacccggcaaacaggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaatgagccagccatgttagagactgacaagagcctgtgagacccggcaaacaggtca 380

                                                                       
Query: 181 ctggggacagctcgaacagtcttactgcactgggcgttggtgcacagttgagacagtgaa 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ctggggacagctcgaacagtcttactgctctgggcgttggtgcacagttgagacagtgaa 440

                                                                       
Query: 241 ggaagggaagcttagtggagtcggctgtgaggagctggctgtgattcgcagggaggggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagggaagcttagtggagtcggctgtgaggagctggctgtgattcgcagggaggggta 500

                  
Query: 301 aggaatg 307
           |||||||
Sbjct: 501 aggaatg 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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