BAC Information

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BAC

Clone NameMSMg01-430F07
Chromosome1 (Build37)
Map Location 175,239,620 - 175,239,937
singlet/doubletsinglet
Overlap genenone
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneDarc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430F07.T7 (MSMg01no430_f07.b1)MSMg01-430F07.TJ (MSMg01no430_f07.g1)
ACCAG522850AG522851
length850808
length of high quality
(start - end)
323 (52 - 374)307 (82 - 388)
definitionCHROMAT_FILE: MSMg01no430_f07.b1 PHD_FILE: MSMg01no430_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:07 2005CHROMAT_FILE: MSMg01no430_f07.g1 PHD_FILE: MSMg01no430_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATTGCACTGAAAGAAGGGCCTCTCAGTTATTATGGAAG
GCTTTTTAACAACAAAGTTCACTAAAAAATGGAAGGGAATGAAGAGAAAA
TATTACCCACCAACTTCCATACCCATTAAGAAAAATGAAATTCAAGATAC
ACGATGAAGATCTTGATAAATGTTACTGGTTCCCACTGAGTTAAAACCAG
AAAAGGCTTAGTCGGCCATCAGTGGGAGGAGAGGCCCTTGGTCTTGCGAA
GATCATATGCCTGCCCCAGTACAGGGGAATGCTGGGGCCAGGAAACAGGA
GTGGGTGGGTTGGGGAGCAGGATTGGTTTGTTTTTTTTTTGTTTTTGTTT
TTTTTTGTGACTTGTTGTTGCCCTCCCTCCTTCCTTTCTATTCTTTCCCT
CTTCCTCTTACTTTTTCTTTACCTCCTATACGTTTCACCTATTTTTCTAC
TTTCCCTCCCTCTCACTTCTTTTTCTACCATCACTTCTCACCAGTCCATT
CCACTTTTTCCCCAATTGAATTTATCTCTTCTCTTTTTTAATTCTGTTAT
ATCCTTTCTTACTCTCCCATATCCCCCTTACCATCTTTCTCGCGTCCTCT
TCGTCTTCCTCCTCATCTCCCCGTAATCATCTCATCATATTCCTTTATCT
CCCCCTTTTCTCTACCCTTTCTTATATTTCCGCAACAATCTCACTATAAT
CCCTCCTTATTCCCCCATTCACCTATCGCGACCAACTCCCTATTTTATCC
GTCCTCCCCCCTTGTTGTTTTTGTCACTCCCTCTGCTCTTTGCCCTTTCT

NNNNNAACGAAGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACGGAA
TGTCTGAGAACCACCTGAAAAAATGCTCAGCATCCTTAATCATCAGAGAA
ATGCAAATCAAAACAACCCTGAGATTCCATCTCACATCAGTCAGAATGGC
TAAGATCAGAAATTCAGGTGACAGCAGATGCTGGCTAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGAAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCAGA
GAATCCCACAATACCTGTCCTGTGCTTATATCCAGAAGATGTCCCAACCG
GTAAGAAAGACACATGCTCCATTATGTTCATAGCAGCCTTATTTATAATA
ATCAGTAGCTGGGAAGAACCCAGATGCCCCCTCACAGAGGAATGGATACC
GAAAAAAGGGGGAATTTTACCCATGGGAGGACAACTCCGCTTTTTAAAAA
AGGGGAATTTTTAAATTTCTTACCCCATGGAAGGGGCCGGGGGGGGTTCT
TCTTGGTGGGGGGAAAACGGCCCCAAAAAAACCCAAGGGAATGGTTCCCC
CTGGAAAGGGGAATTATACCCCACACTTATATACCCCAAAAGGGAAATAT
TTTTTTGTAATCCCGGACGCGGAAAAAAAAAGAAACCCGGGGGCGCGTGT
CCCCTCTCTTATTTGAATTAACCCCTCGCGGGGGGTTGAAGTAATTTTGT
GTTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_f07.b1 MSMg01no430_f07.b1 CHROMAT_FILE:
MSMg01no430_f07.b1 PHD_FILE: MSMg01no430_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:07 2005
         (323 letters)



>mm_chr1_175239542_175240264
          Length = 723

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattgcactgaaagaagggcctctcagttattatggaaggctttttaacaacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaattccattgcactgaaagaagggcctctcagttattatggaaggctttttaacaacaa 337

                                                                       
Query: 65  agttcactaaaaaatggaagggaatgaagagaaaatattacccaccaacttccataccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agttcactaaaaaatggaagggaatgaagagaaaatattacccaccaacttccataccca 277

                                                                       
Query: 125 ttaagaaaaatgaaattcaagatacacgatgaagatcttgataaatgttactggttccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttaagaaaaatgaaattcaagatacacgatgaagatcttgataaatgttactggttccca 217

                                                                       
Query: 185 ctgagttaaaaccagaaaaggcttagtcggccatcagtgggaggagaggcccttggtctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctgagttaaaaccagaaaaggcttagtcggccatcagtgggaggagaggcccttggtctt 157

                                                                       
Query: 245 gcgaagatcatatgcctgccccagtacaggggaatgctggggccaggaaacaggagtggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gcgaagatcatatgcctgccccagtacaggggaatgctggggccaggaaacaggagtggg 97

                             
Query: 305 tgggttggggagcaggat 322
           ||||||||||||||||||
Sbjct: 96  tgggttggggagcaggat 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)