Query= MSMg01no430_o12.b1 MSMg01no430_o12.b1 CHROMAT_FILE:
MSMg01no430_o12.b1 PHD_FILE: MSMg01no430_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:59 2005
(492 letters)
>mm_chr1_13574438_13575328
Length = 891
Score = 859 bits (444), Expect = 0.0
Identities = 480/492 (97%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 ggcccagcctacacaagcctcctcccccgacacctcatttcccgctgttcttttgccagt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 691 ggcccagcctacacaagcctcctcccccgacacctcgtttcccgctgttcttttgccagt 632
Query: 61 tgtctagctagccggcattgttggtgaaactttgcctctttcctttcctccagtgtattc 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 631 tgtctagctagccggcattgttggtgaatctttgcctctttcctttcctccagtgtattc 572
Query: 121 acttgttgcttcgcctttcttcgtaaaacctttccttgactaaaggacatctactgcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acttgttgcttcgcctttcttcgtaaaacctttccttgactaaaggacatctactgcgcc 512
Query: 181 ttatgcttgtgaaccatgttcaataccccaggagtgcctccacacattttactacaccac 240
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttatgctcgggaaccatgttcaataccccaggagtgcctccacacattttactacaccac 452
Query: 241 actgtatgttctgtgagtttgctatacataatgtccgtgctgctttaataaaccaagtat 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 451 actgtatgttctgtgagtttgctatacataatgtccatgctgctttaataaaccaa-tat 393
Query: 301 taggaaagactaacagtaataacatataacagttatactccggtaccgggtctatgaagc 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 392 taggaaagactaacagtaataacgtataacagttacactccggtaccgggtctatgaagc 333
Query: 361 cagctcctgcgttcagccttacgatgatgtgaggttagatgaagtaaggccgtaggcagg 420
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 332 cagctcctgcgttcagctttacgatgatgtgaggtgagatgaagtaaggctgtaggcagg 273
Query: 421 tgttggcctacagtgtcaaggttaccacgacacaagcactgccctggcggttcatctgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgttggcctacagtgtcaaggttaccacgacacaagcactgccctggcggttcatctgac 213
Query: 481 agccatgcagct 492
||||| ||||||
Sbjct: 212 agccacgcagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_o12.g1 MSMg01no430_o12.g1 CHROMAT_FILE:
MSMg01no430_o12.g1 PHD_FILE: MSMg01no430_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:00 2005
(443 letters)
>mm_chr1_13375832_13376672
Length = 841
Score = 797 bits (412), Expect = 0.0
Identities = 436/444 (98%), Gaps = 4/444 (0%)
Strand = Plus / Plus
Query: 1 agagacatttcaagcatttaccttgccacacagacaactccactattcatctctggaaa- 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agagacatttcaagcatttaccttgccacacagacaactccactattcatctctg-aaac 259
Query: 60 tttgtcatagaaacattctggacgtgttattaaatgcacccaggactgagattcccacca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttgtcatagaaacattctggacgtgttattaaatgcacccaggactgagattcccacca 319
Query: 120 gactcttacacattgtagtttcagaaccttgaaaagtatttgccaggggaagtaaagctc 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 gactcttacacattgtagtttcagaaccttgaaaagtattagccaggggaagtaaagctc 379
Query: 180 ggcccagagaaaaacaaagtttgcatgcggagaatgtcctccatctacagccttcccagc 239
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 380 ggcccagagaaaaacaaagtttgcatgcggagaatgtcctcg-tctacggccttcccagc 438
Query: 240 cccaccccctatgtggcacacagctagtccttcctttcctgacttttgtttacagtatag 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cccaccccc-atgtggcacacagctagtccttcctttcctgacttttgtttacagtatag 497
Query: 300 tcacatctttcatcacatctgggttccaccatgcttttctgtgtccttgctctgaaatcc 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcacatctttcgtcacatctgggttccaccatgcttttctgtgtccttgctctgaaatcc 557
Query: 360 ttcctgccatctcttttttactatcattagtccctgatctcttgtgggaaatcttccttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcctgccatctcttttttactatcattagtccctgatctcttgtgggaaatcttccttc 617
Query: 420 ccctgaatagtctcccttctgttc 443
||||||||||||||||||||||||
Sbjct: 618 ccctgaatagtctcccttctgttc 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 841
Length adjustment: 9
Effective length of query: 434
Effective length of database: 832
Effective search space: 361088
Effective search space used: 361088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
