BAC Information

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BAC

Clone NameMSMg01-430P22
Chromosome1 (Build37)
Map Location 127,953,117 - 127,953,491
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430P22.T7 (MSMg01no430_p22.b1)MSMg01-430P22.TJ (MSMg01no430_p22.g1)
ACCAG523356AG523357
length813874
length of high quality
(start - end)
381 (47 - 427)138 (78 - 215)
definitionCHROMAT_FILE: MSMg01no430_p22.b1 PHD_FILE: MSMg01no430_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:07 2005CHROMAT_FILE: MSMg01no430_p22.g1 PHD_FILE: MSMg01no430_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCCCTCATTATAATCAGATGTTGTTTTTATTAGCGAGAACCAT
AACCCATAATGATAATTTTACTTAGCATAAAATAGACTTTAGAGTGAACA
TAAACATTATGTGTGTGTCATGTATGCGCACATATGTGTAGAGGAGAGAG
GTAGACACTGGATATTTTCCACTATCAATCTCTATCTTATCTTTTGAGAC
AGGATCTCTGACTGAGCCAGGAGCTTACTGTCTGTGTAGACCAGATGGCT
GTGGAGCATTAGGGATCAAATACCCCTTAAACTAAGATTATAGACTTGCA
TGCTATGCCCAGCTTTCATGCCGGTGTTAGAGATCCAGACTCTGGTCCTC
CTGTTCTCAGGGCAAGCACTTTACCCACTGAGCCATCCATCTTCCACACC
GATCGTTTGCAGAAGAAAAGCAGTCCGCTTCTGTTTTAATTCCTGTTTCC
CTCCCTTATATCCCAAGCTCCAATTATGCCCTCTTCGCCCTATTCTTCTT
TCTCCCCTCCATTATATTCCTCTTTAATTAACTCCCCCCCCCCATTTTTT
CTTTTTTCTACCTGTACTTCTTCTTTCTCCTTTTTTCTTCTTTCTTTTTC
TCTTTATATTACTCTTCCCATTCACTTTTTCTATTTATAAATTTTCATCC
CTCTTTCTTCTTCTTTTTTTCCCCTTCTATTACCCTTCCCCGTCTTCTCC
CTCTTTCTATACTCTTCTCGTCTTCTTCTCCCTTTATTTTCATAACCCCT
TCCCCCCTTATCN
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAACAAGTAAGTTCTTATACCA
GCAAAGGACTGCCTCAGCCGCAGGAGAGATGAATTTGTCAGTAGAAGTGA
TGACAAGCAGGCAAAAGAGCAAAAGCTTTCTTCCATGTGTGTGTGTGTGT
GTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNTTNNTNNTTTTTTTNNT
TNNNTTTNTTTTTTTTNTTNNTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTCCNTTTTTNNTTTTTTTTTTTTTTNTTCTTTCTTC
TTNCTTTCCNCTCTCCCCCTTTTTTTCTTTTTCTTCTTCCCTTTTTCCCC
GTTTTTTTTTCCTTTCCCTTCCTTTCCCTCCTTCCTCTTCCTTTCTTCTT
TCCCTTTCTTCCTTTTTCGCTCCCTCTCTCTCTTTCTTCCCCTTTTCCTT
TTTTTCTCTTTCCTCCTTCCTTCCCTCCCTTTCTCTCTTCTCTTCCTTCC
TTTCCTTTCTTTTTTCTCCTTTCCTCTCCCCTTCTTTTCCTCCCCTTTTT
CCCCCTTCTCTTCCCCTTTCTTCCTTTTCCTCCTCCTTTCTCTCTCTTTT
CCTTCCCCCTCCTCTTCTTTTTCCTCCTTTTTCCCTTTTCCTCTTCTTCT
TCCCCCCCTCTTCCTTCCCTTTCCTTCCTTCCTTTTCCTTCCCCCCTCTC
CCCCTTTTCATCCTTTCTACCTTTACCCCCTCTCCCTCCATTCCCCCCAT
CCCTTATCCCCTTACATATTCTCCCCTTTCCATCCCCTNCCCTTCCTACT
CCCTTTATCCCCTCCTTCCACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_p22.b1 MSMg01no430_p22.b1 CHROMAT_FILE:
MSMg01no430_p22.b1 PHD_FILE: MSMg01no430_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:07 2005
         (381 letters)



>mm_chr1_127952913_127953693
          Length = 781

 Score =  702 bits (363), Expect = 0.0
 Identities = 372/375 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagccctcattataatcagatgttgtttttattagcgagaaccataacccataat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagccctcattataatcagatgttgtttttattagcgagaaccataacccataat 264

                                                                       
Query: 65  gataattttacttagcataaaatagactttagagtgaacataaacattatgtgtgtgtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gataattttacttagcataaaatagactttagagtgaacataaacattatgtgtgtgtca 324

                                                                       
Query: 125 tgtatgcgcacatatgtgtagaggagagaggtagacactggatattttccactatcaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtatgcgcacatatgtgtagaggagagaggtagacactggatattttccactatcaatc 384

                                                                       
Query: 185 tctatcttatcttttgagacaggatctctgactgagccaggagcttactgtctgtgtaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctatcttatcttttgagacaggatctctgactgagccaggagcttactgtctgtgtaga 444

                                                                       
Query: 245 ccagatggctgtggagcattagggatcaaataccccttaaactaagattatagacttgca 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ccagatggctgtggagcattagggatcaaataccccataaactaagattatagacttgca 504

                                                                       
Query: 305 tgctatgcccagctttcatgccggtgttagagatccagactctggtcctcctgttctcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 tgctatgcccagctttcatgccggtgttagagatccagactctggtcctcctgctctcag 564

                          
Query: 365 ggcaagcactttacc 379
           |||||||| ||||||
Sbjct: 565 ggcaagcagtttacc 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)