BAC Information

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BAC

Clone NameMSMg01-431A01
Chromosome1 (Build37)
Map Location 69,630,135 - 69,800,650
singlet/doubletdoublet
Overlap geneIkzf2
Upstream geneErbb4, LOC667842, EG241084
Downstream geneSpag16, A830006F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431A01.T7 (MSMg01no431_a01.b1)MSMg01-431A01.TJ (MSMg01no431_a01.g1)
ACCAG523362AG523363
length719751
length of high quality
(start - end)		589 (70 - 658)353 (76 - 428)
definitionCHROMAT_FILE: MSMg01no431_a01.b1 PHD_FILE: MSMg01no431_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:08 2005CHROMAT_FILE: MSMg01no431_a01.g1 PHD_FILE: MSMg01no431_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,800,282 - 69,800,650)(69,630,135 - 69,630,487)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTAAAGATAGCTTCATACTTTCTCCTTTTTAGTAAATAAGTTG
TCTTCTTCAAGAGCTGGAGCCTTTGATGGGTGTGGCTCTGCCTTTGGGAC
ACTTTTTCTATTGTCTTAGTGATGTGCACACAGTTTCTCTTGAGAAGCAC
TTATCTCTTTAATAAATCTAGCTGCTCTCTCTGCATCAATCTTGACTATC
TTCTTAAACTTGCCACTCACAAATGTTTTCTCTCCAAAGTGCACATTTAG
ATCTTTCTTCCATCTCTAGCTATAAAGCTAAGAACAGTCTAGAGTTCCTG
TCCATTAGAGGGTCCAAGCCAAATTCAGAGTAGGTCTTCTCTTACTTAAC
TTTCTGGAAACTTCCTCACAGAGCCCAAAGGTATGTCTCCTGAGTGGTTC
TAAATCCAGTCAGATTAACAATGCAGATTAACCATTACAGTTTCTTTGGC
TGATTTCAGAATACCAAGTCAATTCCCTACGCAAAGACACATGGTTTACC
CAAGCTGACCAGTTCAAGCATATTCCTGTTTAAAGTGCTTCATCCAGTCA
TGTATCACTAAAATGGAAATTTCAATAAAGGTGTCATCTCATAGGATCAT
GAGCTCAGAGTAAACTTTAAGGCTATTGTGTTAACGATGGAAATAAGAAT
GGCTACTCTACAGGCTCCC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTAAATGCAGTGGATATGTCA
CTAATACAATTTACTTACACAACAAACTTACTGAAGGAAATAATAGATGG
TTAAGGAGAATTTCCTTTGGACATATTTTGTTTATATAAACTTTCTACAA
CGTAAAACTTTATTACTAGTATGACCTGATTCTGCAAACCCACACACACA
TTAGTTAAGCTTCCTGGACTGAGAAATAATACAAGGGACTTGTGCTTCCA
TTTGCAAGCTTGTATGAATTAATCATATAGAAGACAGGATAGAGTTCTCT
GGATTATTTTCTGTTAAATTGGTGACTTGTGTTTTTTAAAAACAAATTTA
AAATTTCAGTTTTGGTGTGGGGGTGGTGGGTGCTTTTTNTNNTTTTTTTN
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTCTCCTCCTCCCCTTTCC
CCTTTCGCCTTTTTCCTTTTTCCGTCTTCTCTTCTTTTCTTTCCCTCCCC
TTTCCCTCTTTTTCTCCTCCCTTCTCTTTCTCTTCTCCCCTTTTTCCCTC
TCTCCCCTTTCTTTCCCCCCCCTCTTTCTTCTCTTTCTTCTCTCTCGNCC
TCTTTTCTTTCTTCTTCCCGCTTCTCGCCCCTTTTCTCCCTTTTTTTCCC
TTTTTTTTCCTCTTGTGCCTTCTCCCCCCTTTACTCCCCTCCCTTTTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_a01.b1 MSMg01no431_a01.b1 CHROMAT_FILE:
MSMg01no431_a01.b1 PHD_FILE: MSMg01no431_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:08 2005
         (589 letters)



>mm_chr1_69799662_69800650
          Length = 989

 Score =  714 bits (369), Expect = 0.0
 Identities = 369/369 (100%)
 Strand = Plus / Minus

                                                                       
Query: 221 tgcacatttagatctttcttccatctctagctataaagctaagaacagtctagagttcct 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 tgcacatttagatctttcttccatctctagctataaagctaagaacagtctagagttcct 930

                                                                       
Query: 281 gtccattagagggtccaagccaaattcagagtaggtcttctcttacttaactttctggaa 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gtccattagagggtccaagccaaattcagagtaggtcttctcttacttaactttctggaa 870

                                                                       
Query: 341 acttcctcacagagcccaaaggtatgtctcctgagtggttctaaatccagtcagattaac 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 acttcctcacagagcccaaaggtatgtctcctgagtggttctaaatccagtcagattaac 810

                                                                       
Query: 401 aatgcagattaaccattacagtttctttggctgatttcagaataccaagtcaattcccta 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aatgcagattaaccattacagtttctttggctgatttcagaataccaagtcaattcccta 750

                                                                       
Query: 461 cgcaaagacacatggtttacccaagctgaccagttcaagcatattcctgtttaaagtgct 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cgcaaagacacatggtttacccaagctgaccagttcaagcatattcctgtttaaagtgct 690

                                                                       
Query: 521 tcatccagtcatgtatcactaaaatggaaatttcaataaaggtgtcatctcataggatca 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tcatccagtcatgtatcactaaaatggaaatttcaataaaggtgtcatctcataggatca 630

                    
Query: 581 tgagctcag 589
           |||||||||
Sbjct: 629 tgagctcag 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_a01.g1 MSMg01no431_a01.g1 CHROMAT_FILE:
MSMg01no431_a01.g1 PHD_FILE: MSMg01no431_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:08 2005
         (353 letters)



>mm_chr1_69629935_69630687
          Length = 753

 Score =  644 bits (333), Expect = 0.0
 Identities = 348/353 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcctaaatgcagtggatatgtcactaatacaatttacttacacaacaaacttactgaa 60
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcctaaatgcagtgaatatgtcaataatacaatttacttacacaacaaacttactgaa 260

                                                                       
Query: 61  ggaaataatagatggttaaggagaatttcctttggacatattttgtttatataaactttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaataatagatggttaaggagaatttcctttggacatattttgtttatataaactttc 320

                                                                       
Query: 121 tacaacgtaaaactttattactagtatgacctgattctgcaaacccacacacacattagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaacgtaaaactttattactagtatgacctgattctgcaaacccacacacacattagt 380

                                                                       
Query: 181 taagcttcctggactgagaaataatacaagggacttgtgcttccatttgcaagcttgtat 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 taagcttcctggactgagaaataatacaagggacttgtgctttcatttgcaagcttgtat 440

                                                                       
Query: 241 gaattaatcatatagaagacaggatagagttctctggattattttctgttaaattggtga 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattaatcatatagtagacaggatagagttctctggattattttctgttaaattggtga 500

                                                                
Query: 301 cttgtgttttttaaaaacaaatttaaaatttcagttttggtgtgggggtggtg 353
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 cttgtgttttttaaaaacaaatttaaaatttcagttttggtgtggtggtggtg 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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